Polypterus senegalus (gray bichir): 120537934
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Entry
120537934 CDS
T08668
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120537934 (rc3h1a)
04121 Ubiquitin system [BR:
psex04121
]
120537934 (rc3h1a)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120537934 (rc3h1a)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120537934 (rc3h1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-CCCH
zf-C3HC4
Prok-RING_4
zf-CCCH_4
zf-C3HC4_2
zf-CCCH_UNK
zf_CCCH_4
FYVE
Baculo_IE-1
NS3_helicase_C
zf-RING_6
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
120537934
NCBI-ProteinID:
XP_039623151
LinkDB
All DBs
Position
10:complement(163020298..163047359)
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AA seq
1109 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEQLPVNSALLQLVGGQVPKQQVITLLTGAEDTKHYEEARKCVEELALYLKPLSSTRGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPLWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARRTLSQSLTQLTDLGLPNSSGLVAD
EGGLETTLRKPPSLTNGIVPSPGSSMSQLISRGTDSSYEPGLKPLSISAPGSPPDSLDPL
PKGSLSAVPISTHSMSQARIAPEHSAMSKQVQMVARGSQHYAQQAEMYYPEHRPPALPSP
YEHSPYQPGVPYPYPSSQYVQPRYARSGTSEQNMQYTDPYVGPYLPDRQYPGQPTQYPPM
AQPVYSPAHEMRRTFPQPASFQREEIVRMSPVPVEVPAPAAVSPYLSEARERYPPEGYCP
VGPHPSQMRSYPRDSYGRVSHVQPSLDDLHRRRKEIMAQLEERKVISPPPFAPSPTLPHT
FPQDFPQEYLEEKAHAKFKDMDYTSQYSPWSCDTIGSYISTKDVKAKDVMASGSVDMMNV
DSKALWDQPIDLQRRSADVKDDDPIIPFGALPTVSRFGVISRTPRTAFQTAGPVQALASS
QGAATKHISVSADYPAYGPHAGWGPTSYPQHQNVTSQGHFSDRLPRPPPDREQLKMELQQ
VNQQINQQTQIRGLEAANNALLLQREASALATQPHPAKWAPGPLSSEQLSLELHQVEREI
GKRTREIAMESQTSHEMQFKMKVAENGQPEHKTTMEDIGLSVSEGPNGSTLMPDGGLSSL
TGKTASMSLSVDAGGGVELQKNGILHPCP
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagctccacaatggacggagtttctactgtgcccgatctgcacgcagacc
ttcgaggagaccatccgcaagcctatcagcctgggctgcgggcacaccgtctgcaagatg
tgcctcaacaagctgcaccgcaaggcgtgccccttcgaccagaccaccatcaacacggac
atcgagcagctgcccgtcaactcggccttgctgcagctcgtcggaggccaggtccccaag
cagcaagtgatcaccctgctgactggcgccgaagacaccaaacactatgaggaggccagg
aagtgtgtggaggagctcgctctctacctcaaacccctcagcagcacgcgaggggtcggt
ttgaacagtaccactcagagcgtgttgagccggccgatgcagaggaagttggtgacgctg
gttcactgccagctggtggaggaggaagggcgaatccgagcgatgcgggcggcccgctcc
ctgggcgagaggacggtcaccgagctcattctccagcaccagaatccgcagcagctctcc
tccaacttgtgggccgccgtccgtgccaggggctgccagtttcttgggccagcaatgcaa
gaagaagccctgaagctggtcctgctggcgctggaggatggctctgccctctcgcgtaag
gtgctcgtgctgtttgtcgtccagagactcgagccgcgcttcccgcaggcctccaagacc
agcattggccacgtggtgcagctgctttatcgagcctcctgctttaaggtgaccaaacga
gacgaggactcttcgctgatgcagctgaaggaggagttccgcacatacgaggccctacgg
cgcgagcacgactcccagatcgttcagattgccatggaagggggtctgcgcatcgctcct
gaccagtggtcctccctgctgtacggcgaccagtctcataaatcgcacatgcagtccatc
attgacaagttgcagacgccagcttcttttgcccaaagtgtccaggagttgaccatcgcg
ctgcagcggactggagaccccgcaaacctcaaccgcttaagacctcacctcgagctgctg
gcaaacatcgaccccagtcctgatgcacctccacctctgtgggagcaactggaaaagggg
ctggtggcggtcaagacggtggtccatggcttggtggacttcatccagaatcacagcaag
aagggagctgaccagcagcagcctccgcagcacagcaagtacaagacctacatgtgtcgc
gacatgaagcagaagggaggctgccctcggggtgccagctgtacctttgcacattctcag
gaagaacttgaaaaatatcggaagatgaataagcgccttgctgcccggcgtaccctcagc
cagtccctcactcagctcactgacttgggcctgcctaacagctctggcctggtggcagat
gaaggcggcttagagaccactctgcggaagcccccgtccctgacgaatggcattgtcccc
tcgcctgggagcagcatgtcacagctcatctctcgtggaacagattcatcctatgaaccg
ggcctcaagcccctgagcatcagcgctccgggatccccacctgactcgctcgatcctctt
cccaaaggctccctctcggccgtccccatcagcacacacagcatgtctcaagctcggatc
gcacctgagcacagcgccatgtcaaagcaggtgcagatggtagccagagggtctcagcac
tacgcccagcaagccgagatgtattaccctgagcatcggccgcccgctcttcccagccct
tacgagcactcgccttaccagccaggtgtgccctacccgtacccgtcttcacagtacgtg
cagccccgctatgcgaggagtgggaccagcgaacagaacatgcagtacacggacccctac
gttggaccctacctcccagacaggcagtaccccggccagccgacccagtaccccccgatg
gcccagccagtttactcgccggcccacgaaatgcgccgcacctttcctcagcctgcctct
ttccagcgggaggagatcgtccggatgagccccgtacctgtggaggtcccggcgcccgcg
gcggtgtcgccgtatctctcagaggcccgggagcggtatccgccggaggggtactgcccc
gttggcccacacccgagtcagatgcgttcctatcccagggactcgtatggccgggtgagt
cacgtgcagccaagcctggacgatttgcatcgccgccgcaaggagatcatggcccagcta
gaggagcgcaaggtgatctctcctccgccatttgccccgtcgcccacgctgcctcacacc
ttccctcaagacttcccacaagagtacttggaagagaaggctcacgcaaaattcaaggac
atggactacacgagtcagtactcgccctggtcgtgtgacaccatcggttcctacatcagc
acaaaggacgtcaaggcgaaagacgtgatggcttcgggcagcgtggacatgatgaatgta
gacagcaaggccttgtgggatcagccaattgacctacagagaagatcagcggacgtcaaa
gacgacgaccccataatcccttttggagctctgcccaccgtctcgcgatttggagtcatc
tcccgcacgcctcggacggccttccagaccgcgggccccgtgcaggctctggcttcttct
caaggagccgccaccaaacacatcagcgtttcagctgactatcctgcttatgggcctcat
gccggctggggaccgacgtcctacccacagcaccagaacgtcacttctcagggacacttc
agtgacagattaccaagaccccctccggaccgggagcagctgaaaatggaactgcagcaa
gtgaaccaacaaatcaaccagcagactcaaatccgagggctggaggctgctaataatgca
ctcctgctgcaaagagaggcgagcgccctggccacccagccgcacccagccaagtgggct
ccgggaccactgtccagcgagcagctgagcctggagttgcaccaggtggagcgcgagatt
ggcaagagaactagggagatagccatggaaagtcagacgtctcacgaaatgcagttcaag
atgaaggtggcggaaaacgggcagccggagcacaagaccaccatggaggacatcggcctc
tctgtcagcgaaggacccaacggatcgacgctgatgcccgacggcggcttgagttctctg
acgggcaagacggcctccatgagcctgtcggtggacgcggggggcggcgtggagctccag
aagaacggcatcctgcacccctgcccgtag
DBGET
integrated database retrieval system
