Polypterus senegalus (gray bichir): 120537936
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Entry
120537936 CDS
T08668
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120537936 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
psex04091
]
120537936 (frem1b)
Lectins [BR:
psex04091
]
C-Type lectins
Lecticans
120537936 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
120537936
NCBI-ProteinID:
XP_039623156
LinkDB
All DBs
Position
10:complement(163128494..163253274)
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AA seq
2107 aa
AA seq
DB search
MTTMADLAFLVSVVLAVALPAAPSLVQLNRGLKVGRGQSVFLTDNELRFDIPKELDTCKV
EVVLNEPVTQRVGKLSPQVFDCHFLPDEVKYVHNGSPLLGEDKVMLRLYRFTESETAVET
FLLEVQVTEPKETLIQFGPVALEVPEFHGLSNLLDSRVVSFKSIPDGVCTVRLISSETNV
PAHGELIVEDSSRAHQKESGAGTELRKVRQARPACPGNKACPSGAKEVRFLKADCDAFLQ
MGLRYQHLSPPSSEVDYVSIRVEIRDKKTRSLVQMQNAWIPAKIRGAIPNQQPRAAFMSM
FILEVDQFILTPLSTAALDAEDDETPQSRLVFNITKPPMEGYLTHLDDHTKQSSSFTWQD
LHDMKIAYQPPNSSHNGRRNFEVEFVAIDDFFAESPPIMVHFSIRSAETNAPRVSWNMGL
DLLEGQSRPISWENFQIVDNDNINSVYLVAVDGPQHGRLTVRGGKGFMFRVQDIKDGTVR
YHHGDSDTTKDYIVFRISDGKHSIRHKFPINILPKDDTPPFLINNMAFEVQEGAAVLIEE
HMLLASDLDSSDDYILYQLTVLPRAGEIVKKPSAGLPGFPVKSFLQRDLFHGLIYYQHLG
GELFEDSFEFTLSDGHEPPNLSQTHVVVIHISPVKDQLPKEVPSTVRAITVKESDIAYIT
KSHLHFRDVESPDADLMYFVTQACFVPQADREHDAGKLFFTDSMGSKKKDPSVPLLKSFT
QHAINHLKVGYMPPLVDIGPNALDVQFIFSVSDQHGGTLSGLTFNITVLPVDNQAPEIFT
NPMKVEEGAGSFITSENLLVADVDTNPDNLRLQLKQQPRHGHVELNGSPMLEGDIFTLGD
LRGFRVRYQHDDSETLGDTIWFTCTDGFNSADGALSVKIIPVNDEAPELRVGLKSGLECP
EGGHVLITADFLYATDADSDDAKLTFMLARSPSYGVVHRGGRMVDKFSQRDVIQGLISYV
HTGGEVGPSPCLDTLTLIVSDGEAGTVVSCCLEDAVPPPVPLHGSLPVYDLNVTVLPVNN
QAPTITVGDMFIVDEGSSSALLPVFLQASDEDTFPEALIFLVGTSPQYGYLENTLPSPGH
EKSNAGLSIASFSLQHLKDGHINYVQSRHKGVEPTADHFTVSVSDGVHNSMAVPFYVIIS
PKNDERPWLLLGNMTVLEGGIGELTSSVLDVTDLDAPPDILTVSVVTHPHHGTILKAVYG
IQVERYKEMNPDVRQHSLPVQSFTMSQLQQGMKLIYMHDDTESLRDSFSIQVTDGKHTVQ
GTVSVHIVPVNDEKPHLLKNAGLTVDVAENKVISSVALEAEDKDTPQDQLFYVISKSPAF
GQLQLKTKAGWLLLLPGMNFTQEEVDMNRLWYLHTTLLGSEGHDSFRFYLTDHDNESPAE
VFHISLLNAHKGDIALLTKPVTLTEGDKVTLTTDVLLATDGTGRAEELQYAVSAPPAHGH
IEFINYPGLPITDFSQLDVAAQKVCYVHDNSHETGDDILSFVVSNGLTTKSGSLKFVIKQ
VDRIPPTLLRNRGLQLLEGTTMTIGPETLELSDPDTPMNRLVYSISQHPQHGQLLLKGRT
LAVGSFTQLDVNNMDVTYRHDGGKAEVDHFGFAASDGTNDGFLLHGQLRKEPMTFTVQVE
HSDKLPPRVVTKVTPSSVENLKDGRFGVSITSRHLKASDGDSRDEVLEFVVIRPPFFGYL
ENVITGAYIRSRFTQKDLDRRAVRYVIDPSVDTNSDSFEFKVTDAAGNSATPDMLEIQWS
RIELASTCYRICENGGTLSIHVSRSGISAEPAFVAIQIHEDTARLGQDFTHSSATLIQFD
PGVTTKMWKVFLKDDGLEENNEKFQLQLKGPRNAVLGMKDKATVEIVDPRGGHCEPEELP
AGGSTSGRLTVIPEVLVPGNSKPSLEADVPRERHRSPPRGDVPQTDHFLDYSGAIVRDEA
AGKSLQMFHGMVPLKLEEKTGSGPARRSMARAWSWYTNIRDVPQGDSPVINPQPQVSKTA
SCPEGWTLHGGRCYFLSDKVASWTGAEMDCGRRFQSHLVSIHTSTEMTWLRQFAKGQPFW
IGLRSTSEGITWTNGHEMSYDRLKLGTAPHGRRCVATQPRGTWHWRKCSKEQKKYICAHP
VHNPEAF
NT seq
6324 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaatggctgacttggccttcctggtgtccgttgtgttagcagtagccttgcct
gcagcaccgagtctggtccagctcaacagaggattaaaggtgggcagaggacagtcagtg
tttctaacagacaacgagctgcgatttgacattcccaaagagctggacacctgcaaggtg
gaggtggttttgaatgagcccgtcacccagcgcgttggtaagctgagcccacaggtgttc
gactgccacttcttgccagacgaggtgaagtatgtccacaatggaagcccgctgcttggc
gaagacaaggtcatgctgaggctgtacaggttcactgaatccgaaaccgctgtggaaacg
ttcctgttggaggtgcaggtgacagagcccaaggaaactctgatccagtttggccccgtg
gcacttgaagttccagaattccatgggttatcaaatttgctggatagccgagtagtgtca
ttcaagtccattcctgatggagtctgcacagtgcgactcatttcctcagagactaatgtg
ccagcacatggagagctgatcgtggaagattccagccgggctcaccaaaaagaaagtggc
gctggcacagagttacgaaaagttcgacaggcaaggccagcctgtcctggcaataaagcc
tgcccatctggagccaaagaggtacgcttcctcaaggctgactgcgacgccttccttcag
atgggcctccggtatcagcacctgagtccaccttcttccgaggttgattatgtctccatc
cgcgtggagatcagggacaagaagacccgctcgctggtgcagatgcaaaatgcttggatt
ccggcaaagatacgtggggcgattccaaaccagcagccccgggctgccttcatgtccatg
ttcatcctggaggtggaccagttcattctgactcccttaagcacagcagccctggatgct
gaagatgacgagaccccccagtccaggctggtctttaacatcaccaaaccccccatggag
ggctatctgacccacttagatgaccacacaaagcagagctcttctttcacttggcaggac
ctccacgatatgaagatagcctaccagcctcccaacagcagccacaacggccgtcggaac
tttgaggtggagtttgtggccattgatgacttctttgccgagagccctcccattatggtg
cacttctctattcggtcagcagagaccaatgcccctcgggtttcttggaacatgggactg
gacttgttggaagggcagtcaaggccaatttcctgggagaacttccagatcgtggacaac
gacaacatcaatagtgtctacttggtggcagtggatggaccacagcacgggagacttact
gtccgaggtggcaaaggattcatgttcagagtccaggacatcaaagatggcactgtccgg
taccaccatggggacagcgacaccactaaggattacattgtcttccgcatctccgatggc
aagcacagcatccgccacaaattccccatcaacatcctcccgaaggatgacacgccccca
ttcctcatcaacaacatggccttcgaggtgcaggagggcgctgcggtcctcattgaggag
cacatgctgctggcctctgatctggactccagtgacgactacattctctaccagctcacc
gttttgccccgcgcaggcgagatagtcaaaaagccctccgcagggttgccagggttcccg
gtgaagagcttcctgcagagggacctgttccatgggctgatctattaccagcacctgggg
ggtgagctgtttgaagactcctttgaattcacgctgtctgatgggcacgagcctccaaac
ctgtcccagactcatgtggtggtcatacacatctcacctgttaaagaccagctgccaaag
gaagtccccagcacagtgcgggccatcaccgtcaaggagtctgacatcgcgtacatcacc
aagagccacctccatttcagggatgtggagtctcctgatgcggacctcatgtactttgtc
acacaggcctgctttgtcccccaggccgatagggagcatgatgctggcaagctcttcttt
accgacagcatgggctcaaagaagaaggacccctcagtccctctgctcaagtcattcact
cagcacgccatcaatcacctgaaggtgggctacatgcctccgctagtagatatcggcccc
aatgccctggatgtgcagtttatcttctctgtgagtgaccagcatggtggcaccctcagt
ggactaaccttcaacatcaccgtcctgcctgtggacaatcaggctcctgagatcttcacc
aatcccatgaaagtggaggaaggtgcagggagtttcatcacatctgagaacctgctagtc
gctgacgtggacaccaatcctgacaatctgcggctacaactgaagcaacagccaaggcat
ggccacgtggagctgaacggctcacccatgctggaaggtgacatcttcacgttgggcgac
cttcggggattcagagtacggtatcagcatgacgactccgagaccctgggggacaccatt
tggttcacctgcaccgatggcttcaactcagcagatggcgctctctcagtcaagatcatc
ccagtgaacgatgaggccccagagctcagagtcggactaaaatcaggcctggagtgtcct
gaaggtggccatgtcctaatcacagctgacttcctgtacgccactgacgccgacagtgat
gacgccaagctaaccttcatgctggctcgctcccccagctatggtgtggtgcaccgaggt
gggcgcatggtggacaagttctcccagcgagatgtcattcaaggactcatctcctatgtg
catacaggtggcgaggttgggccgagtccctgcctggataccctcaccttgattgtgtcg
gatggagaagcaggcacagtggtcagctgctgcctagaggacgccgtcccccctcctgtt
cctttacatgggtcacttcctgtctatgacctcaatgtcacagttctgcctgtcaacaac
caggcccctaccattactgtaggcgacatgttcatagtggatgaaggctcttcctcagct
ttgttgccagtattccttcaggcctccgatgaagacaccttcccagaagcactcatcttt
cttgttggcacttctccacaatatggctacttggaaaatacccttccatcacctggacat
gagaagagcaatgctgggctcagtattgcctctttcagcttgcagcacctcaaagatgga
cacatcaactacgtccagtctcgtcacaagggcgttgagccaacggcagaccatttcaca
gtgtccgtgagcgatggcgtccacaactctatggccgtccctttctatgtcatcatcagc
cccaagaatgacgagaggccttggctcctgctgggcaacatgacggtgctcgagggcggc
attggcgagctgacctcctcggtcttagatgtcactgacctggacgctccaccagatatc
ctcactgtgtccgtcgtcactcatccccatcatgggaccatcctcaaggcggtctatggc
atccaggtcgagcgctataaggagatgaaccctgatgtgcgccaacacagcttgcctgtc
cagagctttaccatgagtcagctgcagcaaggaatgaagctcatctacatgcacgatgac
acagaaagcctccgggacagttttagcattcaagtgacagatggcaagcacacggtccaa
gggacagtgagcgtccacatcgtgccggtcaacgatgaaaaacctcacttgttaaaaaat
gcaggtctcactgtggacgtggccgagaacaaggtcatctccagtgtggctttggaagca
gaggacaaggacacccctcaggaccagctcttctacgtcatcagcaaaagcccagcattt
ggacagctgcagctcaagacgaaggccggctggctcctgttacttcctggaatgaacttc
acacaggaggaggtggacatgaatcgcctgtggtacctgcacacgacactgctgggctcg
gagggccatgacagcttccgcttttacctgacggaccatgacaacgagtcccctgctgag
gtcttccacatttcactgctcaatgcccataaaggtgacattgctcttcttaccaaaccc
gtaactctaacagagggtgacaaggtcaccttgacgacagatgttcttctggcaacagat
ggcaccggcagagcggaggagctgcagtatgccgtctcggcaccacctgcccacggtcac
atcgagttcatcaattatcccggcctccccatcaccgacttcagccagttggatgtggcg
gcccaaaaagtctgttatgtgcatgacaacagtcacgagacgggagacgatatcttgagc
ttcgtggtcagcaacggcttgaccaccaagtccggctctctgaagttcgtcattaagcag
gtggaccgcatcccccccaccttacttcggaacagaggcttgcagcttctcgagggcacc
acgatgaccattggtccggagaccctggaactcagtgaccccgacacgccaatgaaccga
ctcgtctactccatcagccagcaccctcagcacggccagctcctcctaaagggcaggact
ctggcagtgggcagcttcactcagctggacgtgaacaacatggatgtgacgtatcggcac
gacgggggcaaagcagaggtcgaccactttgggtttgctgcctcggatggaaccaacgac
ggcttcctgttacatggacagctgcggaaggagccgatgacctttactgtacaggtggag
cacagtgacaagttgccccctcgagttgtgaccaaagtgaccccctcgagcgtagagaac
ctgaaagatggcaggtttggagtcagcatcacatctcgtcatctcaaggcttcagacggt
gacagcagagatgaagtgctggagtttgtggtcattcggccccctttcttcgggtacctg
gagaacgtcatcacaggagcctacatcaggagccgcttcacccagaaggacttggacaga
cgagccgtgcgctatgtcattgacccgtcagtggacaccaactccgacagctttgaattt
aaagtaaccgacgcagctggcaacagtgccacgccagacatgctggaaatccagtggtca
cggatcgagctggcatcgacgtgctaccgcatttgtgaaaatggtggcaccctgtcgatc
catgtgtctcgaagtggcatcagtgctgaacctgcctttgttgccatccagattcatgaa
gacacagccaggctgggacaggacttcacgcacagctctgccacgctgatccagtttgat
cccggcgtaacgacaaagatgtggaaagtgtttttgaaggacgacgggctggaagaaaac
aatgagaagtttcagctgcagctcaaaggcccgaggaatgccgttttggggatgaaggac
aaggccacggtggagattgtggaccctcgaggaggtcactgtgagcctgaggagctacca
gcaggtggcagcaccagtggacggctcacagtcattcccgaggtcctcgtcccagggaac
tcaaagcccagcctggaggctgatgtccctcgggagcgtcaccggtcaccaccgcgagga
gatgtgccccagacagaccactttttggattacagtggcgccatcgtccgggatgaggcg
gcggggaaatcgctgcagatgtttcatgggatggtgccactcaaactggaagagaaaacg
ggctcaggtcctgccaggaggtccatggcacgtgcctggtcttggtacaccaacatacga
gacgttcctcagggcgactctccggtcatcaatccacagccacaggtgtccaaaaccgcc
agctgcccagagggctggacgctccacggtgggcgatgctacttcctgagcgacaaggtg
gccagttggacgggggcagagatggactgcggcagaagattccaaagccacctggtcagc
atccacacctccacagagatgacttggctacgccagtttgccaaggggcagcccttctgg
ataggactgaggagcacctctgagggcatcacctggactaacgggcacgagatgtcctac
gacagactgaagctgggcacggccccccacggccgcaggtgtgtggcaacacaaccaagg
ggcacctggcactggaggaagtgcagcaaggagcagaaaaagtacatctgtgcccacccc
gtacacaacccagaagcattttaa
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