Polypterus senegalus (gray bichir): 120538002
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Entry
120538002 CDS
T08668
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120538002 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120538002 (patl1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120538002 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
120538002 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
EspB_PE
DUF244
Motif
Other DBs
NCBI-GeneID:
120538002
NCBI-ProteinID:
XP_039623276
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All DBs
Position
10:complement(167335806..167410857)
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AA seq
811 aa
AA seq
DB search
MMALGLLMYVTSLEDCPLEEEGEGLHGLVDEDDDIDQFNDDTFGAGAVDDDWQEEHERLA
ELEEKVSGGHSSPPQQPLPPHNLSSSSSKADDLADRDRYLDSLLTFGGGANDNLAESFSK
LVMNAGCDFEELSDPAVMRATLPQPRTPLNSSIWENPMGFGNAKPLMSQVEAHSTLAAKQ
DSPLMSIIKEVGLPKRSALGQEEGRDLSERAPPPRSSSPIIGSPPVRAIPIGTPPKQPLG
HNLGQHQQILCPTPIHVRAPLPQQFPSAFNDRMSPNQLLNVTNSPLCAHPFSSNVPPVLS
QLHRAQMIGAAQPGHMSPSHFARVSRLAGNPLTAVNPKLLQGRMGQMMSPVGGGGGFRPF
FSPAPPHPPQCPPGHLHNLHSQQSMFRPDTTHLHPQHRRLLHQRQQQQSRSQQRRGQNGT
CDRTHRHGTSQDRCKRDPYSNLMTSREKEWVCRIQMMQLQSTDPYLDDYYYQNYFEKLEK
RPSPLDSNGDMPKKEHTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVT
TRSDDEEKREKQVWNKRRQILYTIEKTYSLLLDIQDFQKKYVQTPDDEKEALLEQRKSKI
MDMFENLRGKSTDARNSRFPDDHLVQIMCIRKGKRLIGRLITYLSIEQAGVVLTTIARNL
PYILKKDGVDEVLPWLIEPCSLVIHHLPSGQLTDLLQDLSGLSGETELNNSNTNQQLTRV
LQSKFGLTLLYFILSEGERLQSSDDTSELMEDNRWTELVFGVTRELLKIPAANLARPAFT
PPSLLSLFSRYVDRQRLNLLEDKLQLSSRPR
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgatggctctgggtcttttgatgtatgttacttctttggaagactgtcccctcgaggag
gaaggagagggtttgcatggactggtcgacgaagatgacgacatcgatcagttcaacgac
gacacgtttggagctggggctgttgatgatgactggcaagaggagcacgaacgactggca
gaactcgaagagaaagtctctggtggccattcctcacctccccagcagccactacctcct
cacaatttgtcgtcttcctcttcaaaagcggatgatttggctgacagagaccggtatctg
gacagtttacttacgtttggagggggtgccaatgacaacttggcagagagtttcagcaaa
cttgttatgaatgctggctgtgactttgaagagctgagtgatcctgccgtgatgagggcc
actctgccacagcccagaacgccactgaacagcagtatttgggagaacccaatgggattt
ggtaatgcgaagcctctgatgtctcaagttgaggcacactctacattggctgctaaacag
gacagtccacttatgtccataattaaagaggttggccttccaaagagatcagcattggga
caggaggaggggcgagacctgtctgaacgagcgccacctccacgatcatcctctcctatc
attggcagtccaccagttagagcaatacctattggcactcctcctaaacagccacttgga
cacaacctcggccaacaccagcagatcctttgcccaacgcctatacatgtcagagctccc
ctgccacaacagtttcccagtgctttcaatgaccgaatgtcccccaaccagctgctcaac
gttacgaattcccccttgtgtgcccatcctttctcatctaatgttcctcctgtcctgagc
caacttcaccgtgcacaaatgattggagctgcacagcctggtcatatgtcacctagtcat
tttgcccgtgtctccagactggctggaaaccctctgactgctgttaaccccaagctgcta
caaggtcggatgggacaaatgatgtcaccggttggcggcggtggaggttttcgtccattt
tttagtcctgcacctccacatcctccccagtgccctcctgggcacctccataacctccat
tcccaacagagcatgttccgacctgacactacacacctgcacccccagcaccgcaggctt
cttcatcagaggcagcagcagcagtccagaagtcagcagcgcagaggacagaatgggaca
tgtgaccgtacccatcggcatggcacatctcaggacaggtgtaaaagagatccgtacagc
aacttgatgacatcccgggagaaggagtgggtgtgccgaattcagatgatgcagctccag
agtactgatccttatctcgatgactactactaccagaactattttgagaagctggagaag
agaccatcacctttagactccaatggagacatgccaaaaaaagagcacacaaaactcatt
actcctcaggttgcgaaactggagcatacctaccgaccagtgcagtttgcaggctcactg
gggaagttaacggtgtccagcgtaaacaacccacgcaagatgattgacgccgtagtgacg
acgcgctcagatgacgaggagaaacgagagaaacaggtttggaataagaggcgccagatc
ctttacacaattgagaagacatacagcctcttgctggacattcaggactttcagaaaaag
tacgtccagactccagacgatgagaaggaagctttattagaacagcggaagtctaaaatc
atggacatgtttgagaatctccgaggcaagtccacagacgccaggaacagcaggttccca
gatgaccacttagtgcaaatcatgtgcattcgtaaaggaaagcgtctgattggcaggcta
attacgtaccttagtatagaacaggcaggagtcgtcctcacaacaatcgccagaaacctt
ccatatatcttaaagaaggatggagtagacgaggtgctgccatggctgattgagccctgc
tcccttgtgatccaccatctgcctagtgggcagctgacagacctgctgcaggacctcagt
gggctctcgggggaaacagaactgaacaactccaacacaaatcagcagctaacaagggtg
ctgcagagcaagtttggcctgacattgttatacttcattctcagtgagggagaaaggcta
cagagttctgacgacaccagtgaactaatggaagacaatcgctggaccgagctggttttt
ggagtcacccgtgagctgttaaagatcccggctgcaaacctcgccagaccagccttcaca
ccgcccagcttgttatctcttttctctcgatatgtcgacagacaacgcctcaatttgctg
gaagataaactacaactttcttccaggcccaggtag
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integrated database retrieval system
