Polypterus senegalus (gray bichir): 120538745
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Entry
120538745 CDS
T08668
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120538745 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psex03400
]
120538745 (polb)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120538745 (polb)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
120538745 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
120538745 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
HHH_3
HHH_2
NTP_transf_2
DUF4806
Cdd1
DUF6932
Motif
Other DBs
NCBI-GeneID:
120538745
NCBI-ProteinID:
XP_039624112
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All DBs
Position
11:24744476..24807398
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AA seq
335 aa
AA seq
DB search
MSKRKAPQESLNEGITDFLIELANYERNVNRAIHKYNAYRKAASVISKYPFKIKSGAEAK
KLDGVGAKIAEKIDEFLATGKLRKLENIRKDDTSSSINLLTRVTGIGPAAARKFVEEGVK
TLDDLKKVEHKLNHHQKIGLKYFEDFEKRIPREEMVKMQKLILSELEKLGPEYIGTICGS
FRRGAESSGDIDILLTHPDFTSESPKMPKLLHAVVESLEEIGFITDTLSKGDTKFMGVCQ
LDSECSSFEFYHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRARALDMGFTLNEYSIRP
LGVTGVPGEPLPVDSEKDIFDYIEWKYREPKDRSE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcggaaggcacctcaagaaagcctaaacgaaggcatcaccgactttctgata
gagttagccaactatgagaggaatgtgaacagagcaatccacaaatacaatgcttatagg
aaggcggcatccgtaatttcaaagtatccttttaagatcaagagtggtgctgaagcaaaa
aagttggatggggttggtgctaaaattgcagaaaagattgatgagtttctggcaactgga
aaactaaggaagcttgagaatatccgcaaagatgacactagctcgtcaatcaatttgctc
acaagagtgacagggattggaccagctgctgcacggaaatttgtggaagaaggagtaaaa
accttagatgatttaaagaaagttgaacataaattaaaccaccatcagaagattggcttg
aagtactttgaggattttgaaaagagaatccctagagaagagatggttaaaatgcagaag
ctaattttgtctgaacttgagaaactgggtcctgagtatattggaacaatatgtggcagt
ttcagaagaggtgcagaatcgagtggagatattgatattcttttaactcatcctgatttc
acttcagaatcacccaaaatgccaaagttacttcatgcagtggtggaaagcctggaggaa
attggctttataacagatacactgtccaagggggacacgaagttcatgggtgtatgccag
ttggattctgaatgttccagctttgaattttaccatcgcaggattgatatcaggttgatt
cccaaagaccaatattactgtggggttctctacttcaccggcagtgacatcttcaataag
aacatgcgagcacgtgcgctagacatgggctttaccttgaatgagtattctatccgaccc
cttggagtaacaggtgtccctggtgagcctttaccagtggacagcgagaaagatatcttt
gactacatcgagtggaaatatcgagagcccaaagaccgcagcgagtga
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