Polypterus senegalus (gray bichir): 120538791
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Entry
120538791 CDS
T08668
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120538791 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120538791 (supt5h)
03019 Messenger RNA biogenesis [BR:
psex03019
]
120538791 (supt5h)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120538791 (supt5h)
RNA polymerase I system
120538791 (supt5h)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120538791 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
120538791
NCBI-ProteinID:
XP_039624205
LinkDB
All DBs
Position
11:30543049..30623741
Genome browser
AA seq
1081 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDAEENEEEEGRGSEKAEEDDQDEVEEEEEEDDYYDEEEEEDD
DERPQKRPKHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEVEVSNIDHAVLDEDRSGA
RRLQNLWRDQREEELGEYYMKKYAKSSGGEHYYGGSDELSDDITQQQLLPGVKDPNLWTV
KCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYIESYKQTHVKSAIEGV
GNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQNT
ISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVTTDGDFLIFE
ANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTEGKDKEREHNLQP
GDNVEVCEGELINLQGRILSVDGNKITLMPKHEDLKDPLEFPARELRKYFKMGDHVKVIA
GRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQL
DPQTVGVIVRLERETFQVLNMQGKVVIVRHQAVTRRKDNRFAVALDSEQNNIHVKDIVKV
IDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTIGGF
APMSPRISSPMHPSGGGPQQRGSHGGGMGRGRGRRDNELIGQTVRISQGPYKGYIGVVKD
ATESTARVELHSTCQTISVDRQRLTPVGVRRPGGMTSSYSRTPMYGSQTPMYGSGSRTPM
YGSQTPIHDAGNRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADEEYDYNYDDEPS
PSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPS
PSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNP
HTPGSSIEQSSCDWATTDILVRVRDTFLDSQVVGQTGVIRSLSAGMCSVFLVDTDKVVSI
SSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKLE
V
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagtgaagacagtgacttctctgacaaccagagtgagcgtagcagtgatgct
gaagaaaatgaggaggaggaggggaggggcagtgaaaaagcagaagaagatgaccaagat
gaagtagaagaggaagaggaagaagatgattattatgatgaagaggaggaagaggatgat
gatgaacgtccacaaaaacggccaaaacatgggggattcattcttgatgaagctgatgtt
gatgatgagtatgaagatgaagatcagtgggaagatggtgcagaggacattttagagaaa
gaagaagtagaagtttccaacattgatcatgctgttctggatgaggacagatctggagca
agaagactgcagaatctttggagagatcaaagagaagaagaattgggcgagtattatatg
aagaaatatgccaagtcttctggaggagaacattactatgggggttcagacgaactctct
gatgacatcacccaacagcagttgcttcctggagtaaaggatccaaatttgtggacagta
aaatgcaagattggagaggagagggcaacagcaattgccttgatgagaaagtttattgcc
taccagttcacagacacgcctctacaaatcaaatctgttgttgcaccagagcatgtaaag
ggctacatctatattgagtcttataaacagactcatgtgaagtcagcaattgaaggtgtg
ggaaacttgcgcatgggattttggaaccagcaaatggtaccaatcaaagaaatgactgat
gttcttaaggtggtcaaggaggttaccaaccttaagccaaagtcctgggtccgcctaaaa
agaggcctatataaggatgatattgcacaggttgactacgttgaacctagccaaaacaca
atatcgctcaaaatgattccccgtatagattatgatcgcatcaaggctcgaatgagtttg
aaagactggtttgcaaaaaggaagaaatttaagagacccccacagagactttttgatgcg
gagaaaatcaggtcactaggtggagaggtaactacagatggagatttcttgatatttgaa
gccaatcgctacagccgaaaaggattcttgttcaaaagctttgccatgtctgctgttatc
acagatggagtaaaacctacactgtcagaacttgagaaatttgaagaccaaccagagggg
attgatcttgaagtggtaacggaaggaaaagacaaagaacgggagcataacttgcaacct
ggagataatgtagaggtctgtgagggtgagttgatcaacctacagggaaggatcctcagt
gtggatgggaacaaaataactctcatgcccaagcatgaagacctcaaggatcctttagag
tttccagcacgagagttgcggaagtactttaaaatgggtgatcacgtgaaagtgattgct
ggacggtatgaaggagacactggattaattgtacgtgtggaggagaactttgttattctt
ttttcagatctcacaatgcatgagttgaaagtccttcctagggacctgcagctctgctca
gaaacagcttcaggggtggatgtcggaggtcagcatgagtggggggagctggtccagtta
gatccacaaactgttggagtcattgtgcgtcttgaaagagaaacattccaggttttaaat
atgcaaggcaaggtagtaattgttagacatcaggctgtcacaagaagaaaggacaaccgg
tttgctgtggctttggactctgaacaaaacaacattcatgttaaagacattgtcaaggtc
attgatggtcctcattcgggtcgtgagggagagatcaggcacttattcagaggatttgct
tttttgcactgtaagaagcttgttgaaaatggtggcatgtttgtctgtaaaacgcgacat
cttgtattggctggagggtccaagcctagggatgtaacaaattttaccattggtggattt
gcccccatgagtccacgaattagtagcccaatgcatcccagtggaggaggacctcagcag
agaggaagccatggtggaggaatgggtcgtggccgaggcagaagagacaatgaattaatc
ggacagactgtcagaatttcacaaggaccctacaaaggttacattggtgttgtgaaagat
gcaactgagtcaactgctcgtgtggagctacattccacctgccagacgatatctgtagat
agacagcggctcaccccagtgggtgtaagaaggcctggaggaatgacctcctcatatagc
cgtacaccaatgtatggctcccaaacaccaatgtatggatctggatctagaacacctatg
tacggatcccagacacctatacatgatgctgggaatagaacaccacattatggatcccag
actccactgcatgatggtagccgaacacctgggcaaagtggagcttgggaccccaataat
cctaatacaccatctagagccgatgaggagtatgactataactatgatgatgagccttct
ccttccccgcaagggtatggtggaactcccaacccccagaccccaggttaccccgaagtc
ccatctccacaagtaaatccacagtacaatccccaaacacctggaacgccagctatgtac
aacacagaccagtactctccatatgcggccccttcaccccaaggctcctatcaacccagt
cctagtcctcagagctaccatcaggtggctcccagtccggttggctaccagaatacgcac
tcaccggccagttatcatcctactccttctcctatggcttaccaggccagtcccagtccc
agtcctgtgggttacagtcctatgacacctggagcaccttcccctggtggctataatcct
cacactcctggctcaagcattgaacagtcttcttgtgactgggccactacagacattttg
gtgcgcgtcagggatacctttttggacagccaggttgttggtcaaactggagttattcgc
agtttgtcggctggaatgtgttcagtgttcctggtggatacagacaaggtcgttagcatt
tctagtgagcatttggagccagtgacgcccactaagaacaataaggtaaaggttattttg
ggagaagaccgtgaagctactggtgtcctattgagtattgatggcgaggatggaattgtt
cgaatggagctggacgagcaacttaagatcttgaatcttcgcttccttgggaagcttgaa
gtttaa
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integrated database retrieval system
