Polypterus senegalus (gray bichir): 120538948
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Entry
120538948 CDS
T08668
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120538948 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120538948 (usp39)
Spliceosome [BR:
psex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
120538948 (usp39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
120538948
NCBI-ProteinID:
XP_039624520
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Position
11:complement(50693111..50742965)
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AA seq
495 aa
AA seq
DB search
MSIKRERISDYEDGEDVPVKFVRSHPEQTDRRSRHCPYLDTINRSVLDFDFEKLCSVSLS
HINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDI
TYVLKPTFTKQHIASLDKQGRLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVPPL
RNYFLEEENYQSIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK
NFQITKQGDAVDFLSWFLNALHGALGGTRKKPSIITKVFQGSMRIFCKKLPHPDLPAEEK
EALLANEEYQEKMSESSFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNGLTEKEY
KTYKENFLKRFQLTKLPPYLIFYIKRFTKNNFFVEKNPTIVNFPITSVDLREYLAEEVQA
TEKNATYDLIANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQ
IWKRREDDETNQQGA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtccataaaaagggagagaatttcagattatgaggatggagaagatgtcccagtaaaa
tttgtgagatcccatcctgaacaaactgaccgacgcagtcgacactgtccatacttggat
accatcaacaggagtgtattggattttgactttgaaaaattatgctccgtgtctctctct
cacatcaatgtatatgcttgtctgatttgtgggaaatatttccaaggacgtggtttgaag
tctcatgcctacacacacagtgttcagttcacacatcacgtgtttctcaacttgcacaca
cttaagttctactgtttgccagataactatgaaatcattgactcatccttggaagatatt
acatatgttttgaagcctacttttacaaaacagcacattgccagtttggacaaacaagga
aggctgtatcgtgcttatgatggtactacataccttccaggaattgtgggtttgaataat
attaaagccaatgactatgccaatgtggttctgcaggctctctcaaatgtaccaccactg
cgtaactactttctggaggaggagaattaccagtctattaagcgaccaccaggagacata
atgtttttgttagtacagcgttttggggagttaatgagaaaattgtggaacccacgtaac
ttcaaggctcatgtctcgcctcacgaaatgcttcaggctgttgttttgtgcagtaagaaa
aactttcagatcaccaagcaaggcgatgctgtggatttcctttcctggtttttaaatgct
ttacatggagcattaggaggcacaaggaagaaaccatcaattatcacaaaggtgttccag
gggtcaatgcgcatattttgcaaaaaactacctcacccagatttgcctgctgaagaaaaa
gaggcattgttggcaaatgaagaatatcaagagaaaatgtcagagtcctcttttttgtat
ttaactcttgaccttcctacagcacccctgtacaaagatgagaaggagcaacttatcatt
ccacaagttccgctttttaatatcttggccaaatttaatggacttactgaaaaggaatat
aaaacatataaggagaacttcctgaagcgcttccagcttacaaagcttccaccatacctc
attttctacattaaaagattcacaaaaaacaacttttttgttgaaaaaaaccctactatt
gtcaacttcccaattacaagcgttgatttgcgtgagtacctcgccgaagaagtccaggct
acagagaaaaacgcaacttatgacctaattgctaatgtggtccatgatggaaaacctact
gaaggctcctacagaattcatgtgctacaccacggtaccggaaagtggtatgaactacaa
gacttgcaagtgacagacattcttcctcagatgatcacactttctgaagcttacattcag
atctggaaaagacgagaagatgatgagaccaatcaacagggagcatga
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