Polypterus senegalus (gray bichir): 120539347
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Entry
120539347 CDS
T08668
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120539347
Spliceosome [BR:
psex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120539347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
UTP6_C
TPR_21
HrpB1_HrpK
TPGS1_C
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
120539347
NCBI-ProteinID:
XP_039625272
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All DBs
Position
11:98037371..98077686
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AA seq
697 aa
AA seq
DB search
MAAAAEVLGRNTNSSNSPNRSEITRETNPDVLVSKSSSKDRAPTIENTIHEGSTSMTLVK
EKAHLYANMMADYGELDDTDQDSPPEFEKFWKATQENPLDFNAWIDLLQFIEHEGHMPSA
RKAFNAFFIRYPYCYGYWKKYVDLERRSGFCSKAEEVCLQALQMFPLSLDLWIHYINFLR
ETLNMNLKESTEKIRSAFESATLAAGTDFRSDRLWEMYVNWEKEQGNLKAVTAIYDRLLR
IPTQLYSSHFERFKEHVASHPPRKILSIEEFLRLRTQVVSTHTTSKTEEVQDGSLPEDAP
PGIDSTAKDFAEQEQKVRELLIAERQAVFQNNEIEVSKRWNFEEAIKRPYFHVKPLDRAQ
LRNWQNYLDFEIANGSHERVIVLFERCMIACTLYEDFWCKYTKYMEKLSEEGTRNVFQRA
CEVHLPRRPNIHLLWATFEEQHGNRQEARRILENLEQLVPGLAMVRLRRASLERRAGNME
AAESLLREAVQYSQGTPLHAFYSIKLARQLLRVQKNLGRARKVLLDAIEKEPENGKLHMN
LLELEFSADVRQNEGNILQCINGALSSNLPPEMRKIFSQRRLEFHEDFGTTIQSLLTAYE
EHQKLLELSSRKRAAENGDSAESEEKKAKTEDGLAVTHSVMSPSVCATTGMSSMPNSMTG
DVMNNQNSYNYSAWYQQHYGSYGYPSTWNYNQYYSSS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgccgaggttttgggaagaaacacaaactcgagcaacagtccgaacaga
tccgagattacacgggagacaaatcctgatgtcttggtgagcaagtcttccagcaaagac
cgtgcccctaccatagagaatactattcatgaaggcagtacttccatgacattggttaag
gaaaaggctcatctgtatgcaaatatgatggctgactatggagagctggatgacactgac
caggacagtccaccagaatttgagaagttctggaaagcaactcaggaaaatccactagac
ttcaatgcctggatagacttactgcagttcatagaacatgagggtcacatgccttctgct
cgaaaagctttcaatgcatttttcattcgctatccatactgttatggctattggaagaaa
tatgttgacctggaaaggagatctggcttttgttctaaagctgaagaggtgtgtcttcaa
gcattgcagatgttccctctcagtctggatctgtggattcattatattaattttctgcgg
gagacactgaatatgaatctgaaggagtctacagagaaaattcgcagtgcatttgaatcg
gcaacactagcagcagggacagacttccggtctgatcgtctctgggaaatgtatgttaat
tgggagaaagaacaagggaatttgaaagctgtcacagccatttatgaccggctgctaagg
attcccacccagctatacagcagccactttgagaggttcaaagagcatgtggcaagccac
ccaccccgtaaaatactgtccattgaggaattcttgagacttaggacccaggttgtatca
acccataccacttcaaaaactgaggaagttcaggatggatcattgccagaggatgcacca
ccaggaatcgattctactgctaaagattttgcagaacaggaacagaaggttcgtgagctg
ctgattgctgagagacaggcggttttccaaaacaatgaaattgaagtcagcaaacgttgg
aattttgaagaggctataaagaggccatatttccatgtgaagccactagacagagcacag
ctgcggaactggcaaaattaccttgattttgagattgccaatggttcacacgagcgagtt
attgtactctttgagcgctgcatgattgcatgtacactatatgaagacttctggtgcaag
tatacgaaatacatggaaaagcttagtgaggaaggtacaaggaatgtttttcaaagagcc
tgtgaggtacaccttccaagaagacctaatattcaccttttgtgggctacttttgaagag
caacatggtaaccgtcaagaagcccggcgcatactggaaaatttggagcagttagttcca
ggactggcaatggtgcgattgcgcagagctagcttggaaaggcgggcagggaacatggag
gcagcagaatcgctgttgcgggaagcagtgcagtatagccaaggaactccactccatgct
ttttattcaataaagctggccaggcagctactaagggttcagaagaacctgggccgtgct
agaaaagttctgcttgatgctattgaaaaagaaccggaaaacggcaagttgcatatgaat
ttgttggagctagagttcagtgcagatgtgcgacagaatgaaggcaacattctacagtgt
ataaatggagcactgagtagtaacctgccacctgaaatgaggaaaattttctcacaaaga
cgtcttgagtttcacgaggactttggcactaccatacaaagtttgcttactgcttatgaa
gagcatcaaaagttacttgaactatcatctaggaagagagctgcagaaaatggagactct
gctgaatcagaagagaaaaaagcaaaaacagaagatggccttgctgtcacacattctgtt
atgtctccgtctgtgtgtgccactactggtatgagttcaatgccaaacagcatgacggga
gatgtgatgaataatcagaactcttataactatagtgcctggtatcagcaacattatgga
agctatggatatccatccacatggaactacaatcagtattactcctcgagttag
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