Polypterus senegalus (gray bichir): 120539399
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Entry
120539399 CDS
T08668
Symbol
cald1a
Name
(RefSeq) caldesmon 1a isoform X1
KO
K12327
caldesmon
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
120539399 (cald1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
psex04812
]
120539399 (cald1a)
Cytoskeleton proteins [BR:
psex04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
120539399 (cald1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
120539399
NCBI-ProteinID:
XP_039625351
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Position
11:complement(104207530..104512027)
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AA seq
612 aa
AA seq
DB search
MDDFERRRELRRQKREEMRLEAERLAYQRNDDDEEEAARERRRRARQERLRNKDDDEPTI
LNTDKAEVNNQNSLTEDEPKNAKETAETTEEDTALLEKLARREERRQKRLQEAMERQREF
DPTISDHKVTTTEEKVEVRRGRYGEEDVEEKTEIKTYQYNDWREKEEEKREEEKVEEPVQ
EEEEEEEEAEEEQVEEEPQEKIIEEMKDEIEENQKHFRLREEKMDEKPKRSFMREEEAIE
EKPKKPLLQEEVIEEKPKRSYLRDEINEEKVTREKEVDTIHHKKKDQSEMKHQNGDDFYE
DTSNKYKKIERSISVKSNPETEEQDAVARLEAERKLEELRRRRDETESEEFEKLRLKQQE
AEVELEELKRKREERRKILEEEEDRKKQEEAEKKAKEEEEKRRMKEEIERRRAEAAEKRQ
KIAEDSSSDGQEKKPFKCVSPRGSSLKIGERAEFLNKSAQKSVKASHAPVVSKIDNKLEQ
YTTAVQTNKETKSAKPAAADLPVVGDGVRNIKNLWEKGDVFSTAGNPGTPNKETAGLKVG
VASRINEWLTKTPESNKAPGGKPADLKAGDVTNKRSLWENKASSPEKSSSSAKVAVGRQS
KSVTNAGMGHLP
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttgagcgccgccgtgagctcaggagacagaaacgtgaagagatgcgactt
gaagctgaaagattggcttaccagagaaatgacgatgatgaagaagaagcagctcgtgaa
agacgccgcagggctcgtcaggaaagattacgcaacaaagatgatgatgagccaaccatc
ttgaacacagacaaggctgaggtcaataatcagaacagtctgactgaagatgaacctaaa
aacgccaaagaaacagcggaaacaacagaggaagacacagctctactagaaaaactggcc
agacgagaagaaagacgtcaaaaaaggctgcaggaagctatggagagacaaagggagttt
gatcccaccattagtgatcataaagtgacaactacagaagagaaagtagaggtgagaaga
ggccgctatggagaggaagatgtcgaggagaaaacagagataaagacttaccaatataat
gactggagagagaaggaagaagagaaaagggaagaggagaaagttgaagaaccagttcag
gaggaggaggaagaagaagaagaagcagaagaagaacaggttgaagaggaaccccaggaa
aaaatcatagaagagatgaaggatgaaattgaagaaaatcagaaacatttccgtctaaga
gaggagaagatggatgaaaagccaaaaagatcttttatgagagaggaggaagcaattgaa
gaaaaaccaaagaagcctcttctgcaagaagaggttattgaagaaaaaccaaagaggtct
tacttgagggatgagattaacgaggagaaagtgaccagagaaaaggaggttgacaccatt
catcataagaaaaaagaccaatcagaaatgaaacatcaaaatggagatgacttttatgaa
gacacaagtaacaagtataagaaaattgagagaagtattagtgtgaagtcaaatcctgag
acagaggagcaagatgcagttgctcggcttgaagcagaacgcaagctggaggaactacgt
cgtcgccgggatgaaacagaaagtgaagaatttgagaagctgaggttaaagcagcaagaa
gctgaagttgagctggaggagttgaaaagaaagagggaggaaaggagaaaaatcttggag
gaagaagaagaccgcaagaaacaagaagaggctgaaaagaaagccaaagaagaggaggag
aagagaagaatgaaggaagaaattgagaggagacgagcagaggctgctgagaaaaggcaa
aaaattgctgaagattcttcatcagatggtcaagagaagaagccatttaaatgtgtcagt
ccacggggatcttctctaaagattggagaaagggctgaattcctcaataaatcagcacag
aagagtgttaaagcctcacatgccccagttgtttcaaagattgacaacaagttggagcaa
tataccacagctgtccagaccaacaaagagaccaagtctgctaagcctgctgctgctgat
ctgcctgtagttggtgacggcgttcgtaatattaagaatctctgggaaaagggtgatgtg
ttcagcaccgctggaaaccctggaacacccaataaggaaacagctggtcttaaagttgga
gtggcaagtcgtatcaatgaatggctcactaaaacgccagaaagtaacaaagcaccagga
ggaaagcctgctgacctcaaggcaggagatgtaacaaataaacgtagcttatgggaaaat
aaagcctcttctccagaaaaatccagctcatctgccaaggtggcagtgggacgccagagt
aaatcagttaccaatgcaggaatgggacacctaccctag
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