Polypterus senegalus (gray bichir): 120539414
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Entry
120539414 CDS
T08668
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psex03016
]
120539414
Enzymes [BR:
psex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120539414
Transfer RNA biogenesis [BR:
psex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120539414
Prokaryotic type
tRNA splicing ligases
120539414
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
120539414
NCBI-ProteinID:
XP_039625382
LinkDB
All DBs
Position
11:complement(106614896..106650850)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKITNNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFDELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNTEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLDEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARITS
AEGQDYLKGMAGAGNYAWVNRTSMTFLTRQAFAKVFGTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagctacaatgatgagctccagtttctggataaaatcacgaacaactgctgg
cgcattaagaaaggttttgtccccaacatgcaggttgagggtgtcttttacgtaaatgat
tccttggaaaaactgatgtttgatgagcttagaaatgcctgcagaggaggaggtattgga
ggattccttcctgcaatgaaacaaattggtaatgtggcagcattacctgggattgttcac
cgatcaattggacttccagatgttcactcaggttatgggtttgctattggaaacatggct
gcgtttgacatggacaatacagaagctgttgtctctccaggtggtgtgggatttgatatc
aattgtggtgtccggctgctgcgtacaaaccttgatgaaggagatgttcagccagttaag
gaacagctggctcaagccatgtttgatcatattccagttggtgtgggctccaagggtgtt
ataccaatgaatgccaaagacctggatgaagctctagaaatgggaatggactggtctcta
agagagggctacgcctgggcggaggataaagaacactgtgaagagtatggcaggatgtta
caagcagaccccagcaaggtcagctcaaaagcgaagaaacgaggcctgccacagttgggt
accctgggtgctggaaatcattatgctgaagttcaggttgttgatgaaatttacaatgat
tatgctgctaagaagatgggaattgatcacaaaggacaagtttgtgtcatgatccacagt
ggcagtagaggtcttggtcatcaggtggctacagatgccttagttgcaatggaaaaggca
atgaagagagataaaatcattgtgaatgaccgtcagcttgcttgtgcacgaataacatct
gcagaagggcaagattacttgaagggcatggctggagctggaaactatgcttgggtgaat
cgaacctccatgacctttcttacccgacaggcttttgcaaaagtttttggcactacccct
gatgacctggacatgcatgtaatctatgatgtatcccataatatcgctaaggtggaggaa
cacgtggtagatggtaaacagaggactcttctggtgcataggaaaggttccactcgagcc
ttccctcctcatcatcctcttattgctgttgattaccagctgactggacaacctgtttta
attggcggtacaatgggtacgtgcagttatgttttgactggtacagaacaagggatgaca
gaaacctttggaaccacctgccatggagctggtagagcgctgtctcgtgccaaatcccga
aggaacttagatttccaagacgttttagacaaactggcagacatgggaattgccattcgt
gttgcttcacctaaactagtaatggaagaggcacctgaatcttacaaaaatgtgactgat
gttgtgaacacgtgtcatgctgctggcatcagcaaaaaggccatcaaactgcggccaatt
gcagtgatcaaaggttaa
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