Polypterus senegalus (gray bichir): 120539431
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Entry
120539431 CDS
T08668
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120539431 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120539431 (cnot4b)
03019 Messenger RNA biogenesis [BR:
psex03019
]
120539431 (cnot4b)
04121 Ubiquitin system [BR:
psex04121
]
120539431 (cnot4b)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120539431 (cnot4b)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120539431 (cnot4b)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120539431 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120539431 (cnot4b)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120539431 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
DZR_2
Nup35_RRM_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
120539431
NCBI-ProteinID:
XP_039625406
LinkDB
All DBs
Position
11:complement(111178160..111374266)
Genome browser
AA seq
784 aa
AA seq
DB search
MSRSPEVKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKTDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKMNPNFLQPSVSGGEKLKGKANNLQRPNSSSKDAWPSLQSSSKAANGLMSEHRKT
PPILDNGSDQEHMTPDGPDSELGQVATLCPFSAACDSASPSDKSSESLSIGNGDNLQQIS
SSDSPSPPPGLPKQSLVVPISASNHSARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLPP
FPSSPQNNTDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRK
ALADLIEKELSVQDQSPLSPGSLHSPLHPSMSKGLGASFMHSGTPSNANIPNSVLPQRFP
QFQHRAVHNSFSLPGQPTRYPWLGVPRNNLVHLNHTASPTSNSNFLDLSLPAQHSTGLGG
IQITENSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSSSSSSSSTSSVNHTGVPAA
SGGISHSLSWDGSGTWMDPAIITGIPASSGNSVDSLQDDNPPHWLKSLQALTEMDGPSTT
VSSQLPHNTPFSTQIPLHRAGWAPYPPPSNSASFHSPPPGFQTAFRPPSQNPTDLIQSAA
MDRH
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcagtcccgaggtgaaggaggacccagtagaatgccctctgtgcatggagcca
ttggaaattgatgacattaacttttttccttgcacttgtggctaccagatctgtcgattt
tgctggcaccgtatcaggacggatgaaaatggactttgtcctgcctgtagaaagccatat
cccgaagaccctgcagtttataagcccctttcacaagaggagttgcaaaggataaaaaat
gaaaagaaacagaagcaaaatgaacggaaacagaaaatctcagaaaatagaaaacacctt
gccagtgtgcgggttgttcaaagaaatctagtatttgtggtggggctgtctcaaagactt
gctgatcctgaggttttaaaacgaccagaatattttgggaagtttggaaaaatccacaaa
gtagtcatcaataacagtacatcttatgcaggctcacagggtccgagtgccagtgcgtat
gttacttatattcgatctgaggatgcccttagagctattcagtgtgttaataatgttgta
gtagatggtagaacactgaaggcctctttaggaacaacaaagtactgcagttattttcta
aaaagtatgcagtgcccaaaaactgattgtatgtatcttcatgaactaggagatgaggca
gccagctttactaaagaagaaatgcaggctggcaaacatcaagaatatgaacagaagctt
ctacaggagttgtataaaatgaaccctaatttcttgcagccttctgttagtggtggagag
aaattaaaggggaaagccaacaatctacaaagacccaatagtagtagcaaagatgcctgg
ccatcattacaaagctcaagtaaagcagcaaatggcttgatgagtgaacatcggaaaaca
cccccaatccttgataacggttcagatcaagaacacatgacgccagatggtcctgattca
gagttggggcaagtagccactctttgccccttctcagcagcttgtgactctgccagccca
agtgataaatcttcagaatcccttagtatagggaatggggataatttacaacagatttcc
agtagcgattcaccatcacctcctcctggtttaccaaaacaaagcttggttgttcccatc
agtgcatccaatcacagtgcacggtctccatttgaaggagcagcggcagaatcacagtct
ctattttcagacaacagtaattttcgacatcctaaccctatcccaagcggccttccacct
ttccccagctctcctcagaacaacacagactggccaactgcaccagagccacagagccta
tttacctcagaaacaatacctgtgtcatcatcaacagactggcaagctgcatttggcttt
ggttcctctaaacagcaagaggatgaccttgggtttgacccctttgacatcacccgtaag
gcactggcggacctcattgaaaaagaactctctgtccaagaccagtctccactttcccca
ggctctttacacagtcctttacatccctcaatgtctaaagggctaggagctagcttcatg
cacagtggcacaccctcaaatgccaacatcccgaactcagtgttgcctcaaaggtttcca
cagttccagcacagagcagtgcacaactctttcagcctccctggccaaccaacacgttac
ccttggttgggtgttccacgtaataatcttgtgcacttgaaccacacagcatccccaacg
tcaaatagtaattttttggacttgagtttaccagcacaacacagtacaggcttaggagga
atccaaataacagaaaatagcagttctgtagaaagtttaaacatgaaagaatggcaggat
ggtctgagagctttattaccgaacatcaacatcaactttggggggctgccaaattcttca
tcctcctcttcctcttcctcctccacctccagtgtcaaccacacaggagtacccgcagca
tctggggggatctcccacagcttgagctgggatgggtcagggacctggatggacccagcc
atcatcacaggtattcctgcatcatcaggaaacagtgtggactctctacaagatgacaat
ccccctcactggctcaaatccttacaggccctaacagagatggacggtcccagcacaaca
gtgtcttcacagcttcctcacaatactcctttcagcacacagatcccccttcacagagca
ggatgggcaccttacccacctccctccaattcagccagttttcattcgccaccacctggc
tttcaaacagccttcagaccccccagtcagaaccccacagacctaatacaaagtgccgct
atggaccgccactag
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