Polypterus senegalus (gray bichir): 120539936
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Entry
120539936 CDS
T08668
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120539936 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120539936 (myo5c)
04131 Membrane trafficking [BR:
psex04131
]
120539936 (myo5c)
03029 Mitochondrial biogenesis [BR:
psex03029
]
120539936 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
psex04812
]
120539936 (myo5c)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120539936 (myo5c)
mRNA cycle factors
P-body specific factors
120539936 (myo5c)
Membrane trafficking [BR:
psex04131
]
Others
Actin-binding proteins
Myosins
120539936 (myo5c)
Mitochondrial biogenesis [BR:
psex03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120539936 (myo5c)
Cytoskeleton proteins [BR:
psex04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120539936 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
120539936
NCBI-ProteinID:
XP_039626243
LinkDB
All DBs
Position
12:150181236..150268187
Genome browser
AA seq
1743 aa
AA seq
DB search
MALAELYTKYNRVWIPDPENVWKSAEITKDYKPGEDVLEIQLEDGTEIRYPLDPVSQALP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFMESKLIYTYSGIILVAINPYKQLPIYG
EAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNKNQSIIVSGESGAGKTVSARYAMRYF
ATVSKSGSKTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRYQIIGANMR
TYLLEKSRVVFQSENERNYHIFYQLCACADQPEFQNLKLGKADEFKYTSMGGMTYIDGVN
DKSDMAETRRTFSLLGLNEDFQMDVFKVLAAILHLGNVHIKAVSDEKSAVSLNDQHLNLF
CQLLDVNIEGVSRWLCNRSIITASETVVKPMPRHQAVNARDALAKQIYSHLFDCIIDRIN
KALQFPGKQHTFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDENWLQKLYNNYLDKNALFEK
PRMSNKSFIIQHFADKVEYKCQGFLEKNRDTMYEELIGVLRASHLHLLASFFQEDEPTSP
FRKSITFKPARPLVKPSNKQLKTTVGNKFRSSLYMLMDTLNATTPHYVRCIKPNEEKLPF
EYDSKRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMTQKELAGNDKKQTCKT
VLQRLIHDSNQYKFGRTKIFFRAGQVAYLEKLRSDRLRAACITIQKNFRGWIQRKKFVRM
RAAAIIIQQYVRGQRTIRQTVSATTIKQAWAAIIIQKHCRGFLVRRVYQLVQVATITIQA
FARGWIARKRFKKILEDYKASILQKYARAWLARRRFQSIRRVVLNVQLSYRVQRLQKKLE
EQTKENHVLLERLTGLASAHSHDLEKLHKLEENLKKTMAQKKALEEEMRRVTEETSQIIT
QLQSQNATLNEEKQELNLKLQEELQEMKDNVDDFQKKLMADLDREERQRKMLENDFAIQK
EDYEKQIDSLKEEIKCLREEKMQLQQQVQEEFIFNDELKQEIAQLAREAEVIPGLKQEVV
ILETQKSDLEKKNKEQMEHTKVKMAEVTKQLLEGLKEEETLSRLSAEDLNHINDSGELTF
VYEGLKKAASVMEKHFQAQKEGYQKETETLNFKIQHLQGEVCHLQNLFKEENTVKDSIRQ
ELNRLSSENMVIPEYKQQISELQRQKKELEVQIKDQAVEMKDKMEETIDQLHHELEQVQS
QCRMLEVHVKDYDKEKQVLLEKVKKNEQENEDLRKKYEAENEAKTKLRQETTRLSAEKMD
FEEQIDAKDRLIKRLQSQIQAFRAVEKANQVQAPPVPKEYIGMLEYKSEDEAKLIKHLIL
DLKPRGVVVNMIPGLPAHLLFMCVRYADYMNDAAKLKSLMNSIVNGLKDMIKDHPEDFET
LSFWLSNAMHFLNCLKQYSGEEEFMKHNTSRQNKNCLKNFDISEYRQILSDLAIRIYQQF
IKVMEKNLQPIIVPGMLEYESLQGISSMKPTGFRKRSSSIYEDAEVLTINSILQQLSHFH
SAMCQHGMDPELIKQSVKQLFFLIGADTLNGLFLRKDMCSCRKGMQIRCNISYLEEWLKE
KNLQSSSAIDTMEPLSQAAWLLQVNKSTEEDAKEICERCSSLSSVQIVKILNSYTPIDDF
EKRVAPSFVRKVQSFLQGREGTSQLMLDAKYLYQVTFPYSASPQALETIQVPSSLKLGFL
TRL
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggctttggcggagctttacacgaagtacaacagagtatggattcccgaccctgaaaat
gtctggaaatcggctgaaatcaccaaggattataaaccaggggaagatgtgcttgagata
cagctagaggatggaacggaaatcagatatcctctggatccagtatcccaggctttaccg
cctctccgcaatcctgatatcctggtgggcgaaaatgatctgacagctctcagctacctt
cacgaaccagccgtcctacacaacctcaaagtgcgcttcatggagtcgaagctcatctac
acctacagtggtattattcttgtagccatcaatccatacaaacagctaccgatctatggg
gaggccatcatccatgcatacagtggtcagaatatgggagacatggatcctcatatattt
gctgttgcagaagaagcttataaacaaatggccaggaacaataaaaatcagtctattatt
gttagtggtgagtctggagctggaaagacagtatctgcaagatatgcaatgagatacttt
gccacagttagcaaatctggaagcaagacgcgtgtggaagataaagttcttgcatccaac
ccaataacagaggcaattggcaatgctaaaacaacaagaaacgacaatagtagtcgtttt
ggaaaatatacagaaatcagttttgacaggaggtaccagattatcggtgcaaacatgagg
acttacttgctagaaaaatccagagtggtgtttcagtctgagaatgaaagaaattaccac
atattctatcagctctgtgcctgtgcggaccaaccagagttccagaatctgaagctgggc
aaagcagatgaatttaagtacaccagcatgggtggaatgacatacatagacggtgtgaat
gacaaatctgacatggccgagactcgcaggaccttctcactgttaggcttgaatgaagat
ttccagatggatgtcttcaaggtgcttgcagctattcttcatttaggcaatgtacacatt
aaagctgtgagtgatgagaagtcggctgttagtctcaatgaccagcacctgaatctgttc
tgccagcttctggatgtcaatattgaaggagtatctcgttggctatgcaaccggagcatc
atcactgcctctgagaccgtagtaaagccgatgccaagacatcaggctgtcaatgccagg
gatgcactggccaaacaaatctactctcacttgtttgactgtatcatcgacagaattaat
aaggctctacagtttcctggcaaacagcacacttttataggtgttctggacatttatggc
tttgaaacttttgaaataaacagctttgaacaattttgtataaattatgcaaatgaaaag
ctgcagcagcagtttaacttgcatgtgtttaaactggaacaagaagagtacatgaaggag
gatattccatggacactgattgatttttatgacaaccaaccagtcattgaccttattgag
gctaaaatgggtattctggatttactggatgaagaatgtttgtttcctcaagggacagat
gagaactggcttcagaagttgtacaacaattatctggacaagaatgcattgtttgaaaag
ccaagaatgtcaaacaaatcatttataattcaacactttgctgataaggttgaatacaag
tgtcaaggattcttggagaagaaccgagacacaatgtatgaagagctaattggtgttttg
agggctagtcatctccatcttttagcaagcttctttcaagaagatgagccgacatctccc
ttcaggaagagcatcacgtttaagcctgccagacccttagttaagccctccaataagcag
ctgaagacaacagttggaaataagtttcgcagctctttgtacatgctgatggatacccta
aatgccaccacacctcattatgtgcgatgtataaaaccaaatgaagagaagctcccattt
gagtatgattccaagagagttgtgcagcagctccgagcctgtggtgtgcttgagacgatc
cggattagtgcacagagttatccttccaggtggacgtacattgagttttacagtcgctac
agcattctcatgacacagaaggaactcgcaggaaatgataaaaagcagacttgcaagacg
gtgcttcagaggttaattcatgactccaaccagtacaaatttgggcgcacaaagatcttc
ttccgagctggccaggtggcttacctggagaagctccgttctgatagactgcgtgctgcc
tgtattacaatccagaaaaacttccgtggctggattcagcgcaagaaattcgttcgaatg
agagcggcagcgatcatcattcaacagtatgtccgcgggcagaggacaatccggcaaact
gtcagtgcaactaccataaagcaggcttgggcagccatcataattcagaagcactgcaga
ggattcctggttcgtagggtctaccagctcgttcaggtggctactatcacaatacaagca
tttgctcgcggatggattgcccggaaacgtttcaaaaagatacttgaagactataaagct
tccatcctgcagaagtacgctcgggcctggctggcaaggcgtagatttcagagcattcgt
cgggtggttctgaacgtgcagctctcttacagagtgcagagactgcaaaagaagctggag
gaacagacaaaggagaaccatgtattgcttgaaagactgacaggacttgccagtgctcac
tctcatgatctggaaaagctacacaagcttgaggaaaacctgaaaaaaacgatggctcag
aagaaggcattagaggaggaaatgaggagggtgactgaagaaacaagccagattatcact
cagctccaaagtcagaatgctacccttaatgaagagaagcaagaactgaacttaaagtta
caagaggagcttcaggagatgaaagataatgtagatgatttccaaaagaaattaatggca
gacttggacagggaggagcgacaaagaaagatgctagagaatgactttgcaattcagaag
gaagactatgagaagcaaattgactccctcaaggaagagataaagtgcctccgagaggaa
aagatgcagctccagcagcaggtccaggaagagtttattttcaacgatgagctcaagcag
gagattgcgcagcttgcaagggaggctgaggttatcccaggcctaaaacaagaggttgtc
attttggaaacgcaaaaaagtgatctggaaaaaaagaacaaagagcaaatggaacacaca
aaagtaaaaatggcagaggtcacgaagcaacttcttgaaggactgaaggaagaagaaaca
ctgtccaggctgtcagcagaagatctgaatcatattaatgatagcggagagttgactttt
gtctatgaaggtttaaaaaaagcagccagtgtaatggagaagcattttcaggcacagaaa
gaaggttatcaaaaagaaacagagacacttaacttcaagattcaacacctacagggtgaa
gtgtgccacttgcaaaatttgttcaaggaggaaaacaccgtcaaagatagcatccgccag
gaactgaacaggctcagctctgaaaatatggttattcctgaatataaacagcaaatatct
gagcttcagagacagaagaaagagctggaagtccaaattaaagaccaagctgttgaaatg
aaagacaaaatggaagaaaccatagaccagctacatcatgaacttgaacaagtacagtca
caatgcagaatgctggaggttcatgtgaaggattatgataaggaaaagcaggttctgctg
gaaaaggtgaaaaagaatgagcaggagaatgaggacctgaggaaaaaatatgaagctgaa
aatgaggcaaaaaccaaactacggcaagagacgacccgactaagcgcagaaaaaatggat
tttgaggaacagattgatgcaaaggatcgactcatcaagcgacttcaaagccagattcag
gcattccgtgcagttgaaaaagccaatcaagtgcaagcacctcctgttccaaaggaatac
attggaatgttggaatacaaaagtgaagatgaagctaaacttatcaagcaccttattcta
gatctgaaacctcgaggtgttgtggtgaacatgattccaggtcttccagcacacctcttg
tttatgtgtgtgagatatgcggattatatgaacgatgctgccaagctcaagtccttaatg
aattcaattgtcaatggcctaaaggatatgataaaggatcaccccgaggattttgaaaca
ctctccttttggctttccaatgctatgcattttcttaactgtttaaagcagtacagtggt
gaggaggaatttatgaagcacaatacttcacgccagaataaaaattgcttgaaaaatttt
gatatctctgagtacaggcagattctcagtgatctggccattcgtatttatcaacagttc
atcaaggtaatggagaaaaatctacaaccaataatagtcccaggcatgttggaatatgag
agcctccagggtatctccagcatgaaacccacaggattccgaaagcgttcctccagtatc
tatgaagatgcagaggttttgaccattaactccatcctgcaacagctgagccactttcac
agcgccatgtgtcagcacggcatggaccctgagttaataaagcagtctgtcaagcagtta
ttcttccttataggtgctgatactcttaacggcctcttcctccgcaaggacatgtgctcc
tgcaggaaaggaatgcagattagatgtaacattagttatttggaagaatggctgaaagag
aaaaatctccaaagcagcagtgccattgataccatggagcctctttcacaagctgcttgg
ctattacaggttaacaaatcaacagaagaggatgccaaggaaatctgtgaaagatgttca
agtctttcttctgttcagatagtaaaaattcttaactcatacacacccattgatgacttt
gagaaaagagttgcaccatcatttgttcgcaaagttcagtcatttcttcaaggccgtgaa
ggaacttcacaactaatgctagatgccaagtacctctatcaagtcacatttccatacagt
gcctcacctcaggctctagaaactatccaagttcccagcagtcttaaactaggattcctt
acaagactttga
DBGET
integrated database retrieval system
