Polypterus senegalus (gray bichir): 120539972
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Entry
120539972 CDS
T08668
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120539972 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120539972 (xab2)
03041 Spliceosome [BR:
psex03041
]
120539972 (xab2)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120539972 (xab2)
Spliceosome [BR:
psex03041
]
Complex B
Other components
Prp19-related factors
120539972 (xab2)
Complex C
120539972 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
TPR_1
PPR
NRDE-2
Motif
Other DBs
NCBI-GeneID:
120539972
NCBI-ProteinID:
XP_039626314
LinkDB
All DBs
Position
12:complement(155080024..155107832)
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AA seq
850 aa
AA seq
DB search
MSTQKDKQTVVFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAPKSSLNMIYERAIKELP
GSYKLWYNYLRQRRKQVKGKSVIDLAFEEVNNCHERALVFMHKMPRIWLDYCQFLMDQSK
ITRTRRTFDRALRALPITQHRRIWPVYLKFVRKYPLPETAVRVYRRYLKLCPENAEEYIE
YLKSIDRLNEAAIRLAAVVNEETFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQTEDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LFEGQPREIINTYTEAVQTVDPMKATGKPHTLWVSFAKFYEENEQIDDARTIFEKATKVN
YKQVDDLACVWCEYGEMELRHENYDEALRILRKATAVPARKAEYFDSTEPVQNRVYKSLK
IWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFTDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMRVYERATQAVEPAEQYEMFNIYIKRAAEIYGVTRTRSIYQDAITVLPDEHSR
EMCLRFADMECKLGEIDRARAIYSYCSQMCDPRVTPAFWQTWKEFEVRHGNEDTIRELLR
IKRSVQATYNTQVNFMSSQMLKAFSNATGTVSDLAPGQSGMDDMKLLEQKAHLLAAESAR
EKVTTKEKILFVRGDESRSELAELMKQANPDEIDIDDDDSDEGSDDAEPEVVELEQKSVP
SAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgcaaaaggacaagcagactgttgtatttgaagatgacgatctcccgtatgag
gaagaaatcattcgaaacccatattcagtgaagtgctggatgagatatattgagttcaag
cagaatgcgcctaaaagttcacttaacatgatttatgaacgggccatcaaagagctgcct
ggcagttataaactgtggtacaactatctgcgacagagaagaaaacaggtgaaaggaaag
tctgttatagatctggcctttgaggaggttaacaactgccatgagagagccctcgtgttt
atgcataagatgcctcgaatttggctggattactgtcagtttttgatggatcagagtaag
atcaccagaacccgacgtacctttgatagggctctcagagcgcttccaatcacccaacac
cgtagaatttggccagtttacctaaagtttgtccgcaagtaccccttgccagagactgca
gttagggtgtaccggcgatatctgaagctgtgccctgaaaatgcagaagaatacattgag
tatttgaagtccattgatcgcctaaatgaggctgcaatacggcttgctgcagttgtgaat
gaggagacatttgtatcaaaagaagggaaatctaattatcagctctggcatgaactgtgc
gatcttatctctcaaaatccagacaaggtcaactccctgaatgtgggtgcaatcatccga
ggtggactgactcgcttcacagaccagttgggcaagttgtggtgctcaatggctgactat
tacatccgaagtgggcactttgagaaggctcgtgatgtatacgaggaggccattcagact
gttgttacagtgagggatttcactcaggtctttgacagctatgcacaatttgaagagagc
atgattgcagccaaaatggaaaccacatctgaattggggcaaacagaggatgaggacatc
gatctagagcttcgacttgctcgatttgagcagctcattacccggcgcccactgctgctc
aacagcgtgcttctacggcaaaatccgcacaatgttcacgaatggcacaagagggtcaag
ctgtttgaagggcaacctcgagaaataattaacacttacacagaagctgtccagacagtg
gatccaatgaaagctactggaaagccacatacgctttgggtgtcctttgccaaattttat
gaggaaaatgaacaaatagatgatgcaaggactatctttgagaaagccaccaaagttaac
tacaaacaggtagatgaccttgcttgtgtctggtgtgaatatggggaaatggagctgagg
catgagaattatgatgaggctttgaggatactacggaaagctacagctgttcctgcacgg
aaagcagaatattttgactccactgaacctgtccagaatagagtgtacaagagcctaaag
atctggtcaatgttggcagatttagaagagagcttgggaacatttaagtctaccaaggca
gtgtatgaccgcatcattgatctgagaattgctactccacagattatcattaattatgcc
atgtttttggaggagcataattactttgaagaaagctttaaggcatatgaaagggggatt
gcactcttcagatggcccaatgtgtatgacatctggaacacatacctgaccaagtttact
gatcgttatggtggcaagaagcttgagagagccagagatctttttgagcaagcattggat
gggtgtccacctaaatttgccaaaaccatttacctactgtatgccaaacttgaagaagag
tatggccttgccaggcatgctatgcgcgtgtatgagcgagcaacacaagcagttgaacca
gctgagcagtatgaaatgtttaacatttacatcaaaagagcagctgagatttacggggtc
acccgcaccaggagtatctatcaagatgccatcacggtcctgcctgacgagcattcccgt
gaaatgtgtctgaggtttgctgacatggagtgcaagcttggagagattgatcgagctagg
gccatttattcatactgttcccagatgtgtgatccacgggtgactccagctttctggcag
acctggaaagagtttgaggttcgtcatggcaatgaggacaccatacgtgaacttcttcgc
attaagcgcagcgtgcaggccacctacaacacacaggtcaactttatgtcctcgcaaatg
ctgaaggctttttccaatgcgactggtacagtttcagacttggcccctggacaaagtggc
atggatgacatgaagcttcttgagcagaaggctcacttgctggctgctgagtctgcgaga
gaaaaagtgactacaaaggaaaagattctgtttgtcaggggtgacgaatcacgcagtgaa
ttggctgagcttatgaaacaagcaaacccggatgagattgacattgatgatgacgacagt
gatgaaggtagtgacgatgctgaaccggaagtggtggagttggagcaaaagagtgtgccc
tctgctgtgtttggaggactgaaagatgactga
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