KEGG   Polypterus senegalus (gray bichir): 120540107
Entry
120540107         CDS       T08668                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    120540107 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psex03400]
    120540107 (xrcc1)
DNA repair and recombination proteins [BR:psex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     120540107 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 120540107
NCBI-ProteinID: XP_039626531
LinkDB
Position
12:163071655..163140950
AA seq 654 aa
MPEIKIQHVVSCSSEDLTYKADNLLKADTYRKWKAAKPGEKQISVILQFEKSEQIHSIDI
GNEGSAFVEVLVGNSTCVKDQDYEVILVTSSFMSPNESRNGTNLNRVRMFGPDKLVKTNV
EKKWDRVKIVCTQPYNKSTTYGISFIKFHSPPDPNEVLKSSPPKLTKLGQFIVKEEEQGT
PPLKPGSIFFNKKPQSSPTSVNQNDKPTPSYAAASLQSIGLWSNSSSPVAAEKPASLAAT
APKDSTPGKRKFEFTKERQAAPPPPAKKQHSQDVEENTLPKATLTNSVPKKTKGETPSPS
QNKSPKEKKMASKPPKSDVVEFHRILEGTVFVLSGFQNPFRAELRDKALAMGAKYRPDWT
PDSTHLICAFSNTPKYSQVKSQGGKIVRKEWIMDCHKRKQRISYKHYLMDGAESNSEESE
NEDGITDEDDDPPKHKTPIKQKVVSPSAGSAKSKHNKVSQPAISEKPGPSKPMESNASRN
PADNHEMAESSDEGQAGRNGNHAGSESDSGMDTEDELRRVEEQNRKKMQDEDPYGASTDE
NTDLEESSDTPDVNLPIPELPDFLTGKHFLLYGEFPNGERRMLNRYITAFNGTIEEYMNE
KVQFVITAQDWDDKFEDALIENANLSFVKPRWIYACNDRQKLIPHQPYVVVPQM
NT seq 1965 nt   +upstreamnt  +downstreamnt
atgcctgaaatcaaaatccagcacgtcgtttcttgcagtagcgaagatttgacttacaaa
gcagacaacctgttaaaggctgacacctatagaaaatggaaggctgcaaaacctggagaa
aagcagatatcagtaattttgcagtttgagaagtctgaacaaatccacagtattgacatt
gggaatgagggttctgcctttgtggaggtgcttgtagggaattcaacatgtgtgaaagat
caggactatgaggttatactggtgacctcttctttcatgtccccaaatgagagtcgaaat
ggaaccaacttgaatcgtgtgcgaatgtttggaccagacaagttagtaaagacaaatgtg
gagaagaaatgggaccgcgtcaagattgtctgcacacagccttataacaagagtaccaca
tatggaatttcttttataaaatttcattcgcctcctgatccaaacgaagttttgaaatcc
tctccaccaaagcttacaaagctggggcagtttatagtgaaagaggaagagcagggtacg
ccccctttaaagcctggaagtatttttttcaacaaaaagccacaatcctctccaacatct
gtaaatcagaatgataaacccactccaagctatgcagctgcttctcttcagtcaataggc
ttgtggtctaacagctcttcgccagtagctgctgagaagccagcaagccttgcagccaca
gcaccaaaggattcaacaccaggaaagagaaagtttgaattcactaaagaacgacaggca
gcccctccgcctcctgctaagaagcagcattcccaagatgtggaagaaaatactttgcca
aaagccacattaacaaactctgttcccaaaaagactaaaggcgagacaccttctccctca
caaaataaatcgccaaaggaaaagaaaatggcaagcaagcctccaaagtctgatgtggta
gagttccaccgaatcttggaaggcactgtgtttgtactcagtggcttccagaatcctttt
agagctgaactgcgggacaaggctttggccatgggagctaaatacaggccggactggact
ccagacagcactcatctcatttgtgcattttcaaacacccctaagtacagccaagtgaaa
tcccaaggtggcaaaattgtaagaaaagaatggataatggactgtcacaagaggaaacag
agaatttcctacaaacattaccttatggatggagcagaatcaaactcggaggaatccgaa
aatgaggatggaattacagatgaggatgatgacccacctaagcacaaaactcctatcaaa
cagaaggttgtttctcctagtgctgggtctgcaaagtccaaacataataaagtctcacag
ccagcaatttcagaaaagcctggtccctccaagccgatggaatcgaatgcctccagaaat
ccagcagacaatcatgagatggcagaatcatcagatgaaggtcaagcaggtagaaatgga
aatcatgcaggcagtgaaagtgactctggaatggacacagaagatgaacttagaagagtg
gaagagcaaaaccgaaagaaaatgcaagatgaggatccatatggtgcatcaacagatgaa
aacaccgacctggaggagtcttcagacacaccagatgtgaacctgccaatcccagagtta
ccagactttctcacagggaagcattttcttttatatggcgaattcccaaatggcgagagg
cgtatgttgaaccgatacatcacagcttttaacggaaccattgaagaatacatgaatgaa
aaagtccaatttgtaataacagctcaggactgggatgacaaatttgaagatgcactgatt
gagaatgcaaatctctcatttgtaaaacctcgctggatctatgcttgcaatgatcggcaa
aaattaattcctcatcagccttacgttgtagtgccccaaatgtag

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