Polypterus senegalus (gray bichir): 120540233
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Entry
120540233 CDS
T08668
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120540233 (btaf1)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120540233 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_2
TOR1L1_N
TPR_Trm732_C
HEAT_MROH2B_C
Vac14_Fab1_bd
HEAT_GCN1_C
HEAT_GCN1
ARM_ECM29
Arm
Arm_4
Motif
Other DBs
NCBI-GeneID:
120540233
NCBI-ProteinID:
XP_039626734
LinkDB
All DBs
Position
1:243087431..243193490
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AA seq
1859 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLAKVLIYLRSSNWDTRV
AAGQAVEAIVKNVPEWNPTPKVKQESSLYASMEDATSDRLNFFRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEIDPKERLARQRKLLQKKLGLDMGAAIGMDTEDLFNDEDLDYTPSPS
LVVKQSVGRTSGSVTSRNHTMMQAAELIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDVD
SNDKSNDSFEGEPEEKRRKTTNVVIEQPATESKVLIDNIPDNSCLHDESNEWPLDSFCEE
LCNDLFNPSWEVRHGAGTGLREILKYHGSSGGKLVESTLDEMKQQHQEWLEDLVIRLLCV
FALDRFGDFVSDEVVAPVRETCAQTLGVALRHMSEAGVEKAVDVLLKLLTQEQWEVRHGG
LLGIKYALAVRKDMIKSLLPKVLPAVTEGLQDLDDDVRAVAAASLIPVVEGLVQLQADKV
PFIVNTLWDALLELDDLTASTNSIMTLLSSLLAYPQVRQCSIQLSLTILVPRVWPFLHHT
IASVRKAALETLYTLLSKENHNCAVWLTPILQEMLRHIFQSCILESNQEILDLIQKVWSE
LLHQAPLQYVVAAACPWMGAWLCLMMQPSHMPIDLNMLLEVKARSKEKSSGKTRQGSNQV
KEVIQEYIAGADTVTEDFTTRDYYVMRARMMAAKLLGALCCCICDPEVNAMNQDIRPSES
LAQLLLFHLNSKSALQRIAVALLLCEWAALQKNCIAVSSAVQPRLLAILSEHLYYDEIAI
PFTRMQNECKQLITLLSDAHIDVKNKINCSVFTIDQASELVTSIFNEFTTDLNIKSKTLQ
HLESKRQQVQITVTETNQEWQILHLRVHMFTACAIVNLQLLPDKLNPVIKPLMEATKKEE
NTLVQSYAATFIAKLLQQCILRSPCPNPKIIKNLCSSVCIDPLVTPSAACPVPDPIIQEN
SKGVNYEKDGVHHTVNKTKGIITLYRHQKAAFAITSRRGPTPKAVKNAAGEHPAGSSFSG
DVDESKKPCLVQRRGAEFALTTVTKHFGLRLTPDLPYLWDSMVGPLKSSVDPQKFDRQAL
VEKGDSAAQDLVNSLQVLEITAGSMASELHPQLLERLPHLCMCLQHPYTGVRHMAARCVG
ILSKIATTETMNIFLEKILPWLGAINDNTKQEGAIEAMACVIEQLDVDIVPYIVLLVVPV
LGRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPHMSEDLVRQKARERHFLEQLLDGR
KLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYL
RAQEYAKSKAADCSPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERARLQH
QVKKHNLVVASYDVVRNDIDFFSNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMEA
LHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCSLSPLQIQLYEDFAKSRAKVTVDETISTV
SLSEEVEKPKLKAAGHVFQALQYLRKLCNHPALVLTPVHPEYKRIAEQLTAQRTTLQDIQ
HAPKLSALKQLLMDCGLGNGGATEGGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPHLPT
VTYLRLDGSVQAGQRHSIVARFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPM
RDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTIISQENASLQSMGT
DQLLNLFTLDKGKTEEKAETPGTSGKASMKSILDNLGDLWSQEQYDAEYNLDTFIHSLK
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaagacttgacaggttgtttattttattggacactgggaccacaccggtg
acgagaaaagcggctgctcaacagctaggagatgttgtcaaactgcatccacatgaactg
aacaatttgttagctaaagttttaatttatttaagaagttctaactgggatacccgtgtt
gcggcaggtcaagcagtagaggccattgtgaaaaatgttccagagtggaatccaactcca
aaggttaaacaagagtctagcctgtatgcttccatggaggatgcaacatcagatcgccta
aattttttcaggtttgatatttctcgccttctgaaacatggggcatccctcttaggatcg
gctggtgcagaatttgaagtgcaggatgacaaatcaggggaaattgatcccaaggaaaga
ttagccagacaaaggaagcttttgcaaaagaaacttggacttgatatgggtgctgccata
ggaatggacacagaagatcttttcaatgatgaggatctggattacactccatctccatct
cttgttgtaaaacaatctgtaggtagaacctccggctctgtgacttcacggaatcataca
atgatgcaggctgctgaattaattgactctgaatttcggccaggaatgagcaatagacag
aagaataaagcaaagagaatggcaaagttagttgctaagcaacgttcaagggatgtagat
tccaatgacaagagtaatgacagttttgaaggagagccagaagaaaagcgcagaaaaaca
acaaatgttgtcattgagcaaccagcaactgagtctaaagttttaatagacaacatacca
gataattcttgtttacatgatgagtctaatgaatggccactggacagtttttgtgaggaa
ctatgtaatgatcttttcaatccctcctgggaggtacgccatggtgcaggaactggactt
cgtgagattctgaaatatcatggaagtagtggtggaaagttagtagaaagcactttagat
gagatgaagcagcaacatcaggagtggctagaagatttagttattcggctgctttgtgtt
tttgcacttgatcgatttggagattttgtatctgatgaggttgtagctcctgtgcgtgaa
acctgtgctcaaacgttaggcgttgcattgaggcacatgagtgaagctggagtagaaaaa
gctgtagatgtccttttaaagctgttaacccaagaacagtgggaagtgaggcatggtggg
cttcttgggataaaatatgctcttgcagttcgaaaggatatgattaagtcattattaccg
aaagtactaccagcagtaactgagggtcttcaagatttagatgatgacgttcgggctgtg
gcagcggcatcacttataccagttgttgaaggtctggtacagcttcaggcagataaggta
ccattcattgttaacaccttgtgggatgcccttttggagcttgatgatctaactgcatct
accaacagcataatgacactcttgtcttctctgctagcctatcctcaagttcgacagtgc
agtattcagctatcacttaccatcctggtaccacgtgtctggccatttctccaccatact
attgcatctgttcgaaaagcagccttggaaacactgtacactcttctatcaaaagaaaac
cataattgtgctgtgtggctaacccctattttacaagagatgctgaggcacatctttcag
tcttgtattctggaaagcaatcaagaaattctggatctaattcaaaaggtttggagtgag
ttgttgcaccaggctccacttcagtatgtagttgctgctgcttgtccctggatgggtgcc
tggctgtgtctgatgatgcagccgtcacacatgccaattgacttgaatatgctactagag
gtgaaggccagatcaaaggaaaaatcctctgggaaaacacgtcagggatcaaatcaggtt
aaagaagtgattcaggagtatatagctggagcagacactgttactgaagatttcacaaca
agggattactatgttatgagagctaggatgatggcagcaaagttgttgggtgctctctgc
tgttgcatatgtgaccctgaggttaatgcaatgaaccaggatattaggccatctgagtca
cttgctcaactattgctttttcatctcaactcaaaatctgctttgcaacggattgctgta
gcattattactttgtgagtgggcagctcttcagaagaactgtattgctgtgtcaagtgca
gtacagccacgattattggccattttgtcagagcatctttattatgacgagatagccatc
cctttcacaagaatgcagaatgaatgcaagcaactgatcactttactgtctgatgcacac
attgatgttaaaaataaaattaattgcagtgtcttcacaattgatcaagcaagcgagttg
gttacatccattttcaatgaattcactacagatttaaatataaagtctaaaacactgcag
catttggaaagtaaaagacagcaggttcagatcactgttaccgaaaccaatcaggagtgg
cagattcttcatttgagggtccatatgtttactgcgtgtgcaattgtaaacttacagctg
cttccagataaactgaaccctgtgatcaaaccacttatggaagccacaaagaaggaagaa
aatactctggttcagtcttatgcagcaacctttattgctaagctgcttcagcagtgtatt
cttcgatctccctgtcccaaccccaagattattaagaacctctgtagctctgtgtgcatt
gatcctttagtgactccatctgcagcatgcccagtgccagaccccatcattcaggaaaac
tctaaaggagtcaattatgaaaaagatggagtgcatcatactgttaacaagacaaaagga
attataacattataccggcatcaaaaagctgcctttgccattacaagcagacgaggtcca
acaccaaaggctgttaaaaacgcagctggagaacatcctgccggaagtagtttctctgga
gatgttgatgagagcaagaagccttgtttagtgcagagaaggggagcagagtttgcactc
acaactgtaaccaagcactttggattgagattgacccctgacctcccttatttatgggat
tccatggttggacctctaaagagctctgttgaccctcagaagtttgatcgacaggctctg
gtagagaagggcgatagtgctgctcaggatctagttaattctttgcaagttttagaaata
acggctgggtcaatggcttcagagcttcatcctcagctgcttgaacgcctgcctcatctt
tgcatgtgtttacaacacccatatactggtgtaagacacatggcagcacgatgtgtgggg
attcttagcaaaattgctaccacagaaacaatgaacatctttctggagaagattcttcca
tggcttggggcaattaatgacaacaccaagcaagaaggtgcaattgaagcaatggcgtgt
gttatcgagcagctggatgtagatattgtaccatatattgtgcttttggtggttcctgtg
cttggtagaatgagtgatcaaacagacagtgtgcgtttcatggctacacagtgttttgct
acactgatcagattaatgccactagaggctgggattccggatcctccccatatgtctgaa
gatttagttaggcaaaaagccagggaacgtcatttcctagaacaacttttggatgggagg
aagttagagaactacaaaatccctgttcctatcaaagcagaacttagaaaatatcagcag
gatggagttaactggttgtcttttctcaacaaatacaagttacatggtattctgtgtgat
gacatgggtcttggaaagactttacagtctatttgtattttggctggagaccactatctc
agggctcaagagtatgccaagtctaaagcagccgactgcagccccctgccttctttggta
gtttgccctccgacactgacagggcattgggtagatgaagtggggaaattttgttccaga
gaatacctgaatccactgcattatacagggcctcccacagaacgagcaaggctgcagcac
caggtgaaaaaacacaatcttgtggttgcctcttatgatgttgtgcgaaatgatattgac
tttttcagtaacattaagtttaactattgcattcttgatgagggccatgtcattaagaat
ggaaaaacaaagctttcaaaagcagtaaagcagttaactgccaactacagggttattctt
tcaggaacaccaattcagaataatgtgctggaactttggtcgctgtttgatttcctaatg
ccaggatttctgggtacagaacgccagtttgcagctcgatatgggaaaccaattttggca
agcagagatgctagaagctcatcaagggagcaggaggcaggggttcttgcaatggaggct
ttgcaccgccaagtcttgcctttccttttgagaagaatgaaagaggatgtactgcaggat
ctgccacccaaaattattcaagattattattgcagtctcagtcctttacaaatacagctt
tatgaagattttgcaaagtcccgagcaaaggttactgttgatgagacaatttcaacagtg
tctctctcagaggaagttgaaaagcctaaattaaaagctgctggtcacgtgtttcaggct
ctacagtatttaagaaagctttgtaatcatccagcactagttttgacaccagtacatcca
gagtacaagcgcattgctgagcagcttactgcccagcggactacactacaagatattcag
catgcaccaaagctttctgcattgaaacagttgcttatggattgtggattgggcaatggc
ggcgcaacagaaggtggtacagaagcagtggttgcacagcacagagttctcatattttgc
cagctgaaaagtatgctggacattgtagagcatgatctccttaagccacatcttccaaca
gttacctatcttaggctggacggcagtgttcaagctggccagagacattccattgttgca
cggtttaataatgatccttctatagatgttcttttgttgaccactcatgtgggaggtctg
ggtctaaatcttactggagcagatactgtagtatttgtggagcatgattggaacccaatg
agagacttgcaagccatggaccgagcacatcggattggacagaaacgtgttgtcaatgtt
tatcgactgattaccagaggaactttggaggagaagattatgggtttgcagaaatttaaa
atgagcattgcaaacacaatcataagccaggaaaatgctagtttgcaaagtatgggaaca
gaccagctgctaaacctgtttactcttgacaagggcaaaacagaagagaaggcagaaact
cctggtacttcaggaaaagcatcaatgaagtccatccttgacaaccttggagatctttgg
agccaagagcagtatgatgctgaatataatctggataccttcatacattctctaaaataa
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integrated database retrieval system
