Polypterus senegalus (gray bichir): 120540739
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Entry
120540739 CDS
T08668
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03030
DNA replication
psex03410
Base excision repair
psex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120540739 (pole)
03410 Base excision repair
120540739 (pole)
03420 Nucleotide excision repair
120540739 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psex03032
]
120540739 (pole)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120540739 (pole)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120540739 (pole)
DNA replication proteins [BR:
psex03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
120540739 (pole)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
120540739 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
zf-RRPl_C4
GARP
Motif
Other DBs
NCBI-GeneID:
120540739
NCBI-ProteinID:
XP_039627702
LinkDB
All DBs
Position
12:complement(61049463..61080019)
Genome browser
AA seq
2303 aa
AA seq
DB search
MVLQNSGRYQADRNQNRDPENQQDDATTLSAIKRLERSQFTDNMDARFGFERMKEPGEKT
GWLINMHPTEILDDDKRMVSAVDYYFIQEDGSRFKVALPYKPYFYLATKKGCEREVISFL
SKKYQGKIAKLEMLPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVRREISPAVRKNREQ
EKSNDAYTAMLSSALAGDSLTAADDEGTSKKITDQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGSAYPSEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDAQGYLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEASLIQRWFDHVIETKPNVF
VTYNGDFFDWPFLETRAAHHGLSMYSEIGFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVELTMRHAIEEEEGIPLDQVTNFSEV
CSEIKKKLVSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GANCQRKMTWQWRGEFMPASRSEYHRIQQQLESEKFPSLFPNGPPQAFHELSREEQAKHE
KKRLADYCRKAYKKVRSTRVEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQESGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKSTNEKKPKVTISYPGAMLNI
LVKEGFTNHQYQELVDPATLTYETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDSELFELISENRSMSRRLEDYGDQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAETSVRKHFLRKWLKTPALQDFDIRMILDWNYYIERLSS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFISDGRRQVASHQ
VVESSQCSENGDVPDMEDLVKKRGILKPAIPITTKRKRVEFADESQTETQELALTQSWRE
ILGPPPPTGNTREERLVWLRFHKKKWELQARQRRERNKKRRLADGEPLPAGGGAIRGGPS
TGLGSFLRRTARSILDMPWQIVQIAETSQPGLFKLWAVIGTDLHCMKLNIPRVFYVNQRV
PKQDDGALYRKVNRILPRSNVVYHLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVP
LLFRALVQLGCVCMVNKQLAQQIAGREADTFDLEHLEMRSLAQFSYLEPGSIRHIYLYHH
GHGNKALFGLFIPSQRKASVFVLDTVRSNQMPNLTALYSAERLALVDKVGEELMPPDKHN
FEVRAENDPKTVYRALQRALLNYKDERRGPTLIAIQSNWDLKRLSSGMPVLEEFPVVPVH
VVDEISYSVLDWQRHGARRMLRHYLNLDSCLSQAFEMARYYHLPVGNLPEDMSIFGSDLF
LARHLNRHNHLLWLSPTARPDLGGKEADDSRLVMESDEKSSVEINSPGCYSTVCVELDLQ
SLAVNTILQSQHVNDMEGCASLGVSFDVIQTASLEDMMAGNQGTNSLASYDETALCSNAF
RILKSMVVGWVKEITQYHNVFADNQVMHFYRWLRSPTSLMYDPALHRTLHNMMKKVFLQL
VAEFKRLGSNVVYVNFNRIILCTKKRRIEDAIAYVEYITKSIHSREIFHSLSLSFSRCWE
FLLWMDLANYGGIKGKLPSSVLYGEEQEGRSARQQQDGDEDSEDEDETTDRPEEGDEDND
VEDDNVEDLIESNWNIMQYLPQVASCQNYFLMIISAYIAAIYHSMKEELRRNAPGATPIK
RRGGSQISQEPLGDANALPGMITFSQEYVCSELTQNFFTITQKIQKKVTGTRHATEPSEL
FPVLPGSHLPLSNPALEFIKYVCKVLSLDANITNQVNKLKRDLLRLIDVGEFSEEAQFKD
PCQSYILAEVICRHCNFCRDLDLCKDPSVVQEGSVTQQWFCSNCHNPYETDNIEMALVEA
LQKKLMTYTLQDLVCMKCKGVKEANMPIYCSCAGDFTLAFSTKGFSEQLGVFQNIASHYN
MPFLKETITWLLQMSPQLSKEKA
NT seq
6912 nt
NT seq
+upstream
nt +downstream
nt
atggtacttcagaacagcggcaggtaccaggcagaccggaaccaaaacagggatccggag
aaccagcaagatgatgctaccaccctttctgccatcaaaaggctggagcgcagccagttt
acagacaacatggatgcccgctttggatttgaacgtatgaaggagccaggagagaagaca
ggctggttaataaacatgcatccgacagagatcctggatgacgacaaacgaatggtcagt
gctgtagattattacttcatccaggaagatggcagtcggtttaaggttgcccttccgtat
aagccatatttctatttagcaaccaagaagggctgtgagcgagaggtgatctctttcctt
tcaaagaagtaccagggaaaaattgcaaagctggaaatgttaccaaaagaagatcttgat
ctgcccaatcacttagtgggcctgaagcgaaactatataaagttgtccttcaatacagtt
gatgaccttatcaaagtgagacgcgagatctcgcctgctgtgcgcaaaaaccgtgagcaa
gagaaatccaatgatgcgtatacagctatgctgtccagtgccctggcaggtgacagtttg
acagcagctgatgatgagggaacatctaaaaaaatcacagaccagctggataacatagtg
gatatgagggagtatgatgtgccataccacgttcgggtttcaattgatctcaaaattcat
gttgcccattggtacaacgtacgctaccgcggcagtgcctatccctcagaaattgtacgg
agagatgaccttgttgaacgaccagatcctgtggtactggcatttgatattgagaccaca
aaactgcccctgaagttcccagatgcagaaactgatcagataatgatgatctcctacatg
attgatgcacagggataccttattacaaatagggagattgtatctgaggacatagaagat
tttgagttcacacccaagcctgaatatgagggtccttttacagtattcaatgaaccagat
gaggccagtttgatccagagatggttcgatcatgtaattgagacaaagcccaatgtattt
gtcacgtacaatggagacttctttgactggccctttttagagacccgtgctgctcaccat
ggtttaagcatgtacagtgagattggctttcagaaagacagccaaggagaatacaaatct
agccaggcgatccatatggactgcctcaggtgggtaaagcgtgacagttaccttccagtt
ggaagtcacaacctgaaagcagcagcaaaagctaagctgggctatgaccctgtggaactt
gatcctgaagaaatgtgccgcatggctacagaggagccccagacacttgccacatattct
gtgtcagatgctgttgcaacgtactacttgtacatgaagtatgtgcatccttttatcttt
gccctatgcaccattattcccatggaacctgatgaggtcttgcggaaaggttcaggaaca
ttatgtgaagccttgcttatggtgcaagccttccatgctaacattgtgtttccaaacaag
caagagcaggtctttaacaagctaactgatgatggacatgtccttgactccgaaacatat
gtggggggccacgttgaagctctagagtcgggtgttttccgcagcgacattccttgtcgt
ttcaaaatgaatcctgctgcctttgactttctcttgcaacgagtggaactaaccatgcga
catgccattgaggaagaggagggaatccctctggatcaagtcactaactttagtgaagtg
tgcagtgagatcaagaaaaaacttgtgtctctgaaagaggtgcccaacaggattgaatgc
ccattaatctaccatcttgatgtgggagctatgtatcccaatatcatcctcactaatcga
ctacagccatctgctatggtggatgaagcgacttgtgctgcatgtgacttcaataagcca
ggagctaactgtcagaggaaaatgacatggcagtggagaggagagttcatgccagccagt
cggagtgaatatcatcgtatccagcaacagctggagtctgaaaagttcccgtctctcttc
cccaatggtccaccccaagcatttcatgaactgagtcgtgaggagcaggccaaacatgag
aagaagcgcttggcagattattgccgaaaggcctataagaaggttcgcagcacacgtgtg
gaggagcgagtaaccaccatctgccaacgggagaactccttctatgtggacactgtgcgg
gccttcagagaccgacgttatgagttcaaaggcctgcacaaggtatggaaaaagaagctg
tctgcagcacaagaaagtggagatgctgccgaggtgaagcgttgtaaaaacatggaaata
ctctatgagtcactgcagcttgctcacaagtgcatcctcaactcattctacggctatgtt
atgcgtaaaggggcacgttggtattccatggaaatggctggcattgtgtgtttcactggg
gctaacatcattacccaagctagggaattgattgagcagattgggagacccttggagctt
gatacagatggtatctggtgtgtccttccaaacacctttccagaaaactttgtggttaaa
tcaactaatgagaagaagccaaaagtgacaatctcatatccaggagctatgctcaacatc
ctagtcaaggagggatttactaatcatcaatatcaggaacttgtagacccagccacatta
acctatgagacacgctcagaaaatagcattttctttgaggttgatgggccgtacctggcc
atgatcctacctgcctccaaagaagaggggaaaaaactgaagaagaggtatgcagtgttt
aatgaggatggttcactggctgagctgaaaggatttgaagtaaaacgcaggggggagctg
cagctcataaagatctttcagtcttctgtttttgaagcctttctcaagggtaccacactt
gaggaagtctatgcctctgtggctaaggtagcagattactggctggatgtgctgtatagt
aaggctgccaacatgccagactctgaattgtttgagttaatctccgaaaaccgatccatg
tcacgtcgcctagaagactatggtgaccagaaatccacatcaataagcacagccaagcgg
ctggcggaattcttgggtgatcaaatggtgaaggatgcagggctaagttgtcgctatgtt
atctcccgcaagccagaggggtcccctgtcacagaaagagcaattccacttgccattttc
caggctgaaaccagcgtccgtaagcactttttgcgcaagtggctgaagactcctgctttg
caagattttgacatacgcatgatcttggattggaattactatatagagagactgagcagt
gccatccagaaaattataactattcctgcagccctacaacaggtgaaaaaccctgttcca
agagtcagacatcctgactggcttcataaaaagctcttggaaaagaatgatatctataaa
cagaagaaaatcagtgaactgtttatcagtgatggaagaagacaggtggcgtcgcatcaa
gtggtggaaagcagccaatgttcagagaatggggatgttccagacatggaagatctagtg
aaaaaaaggggcattttgaaaccagccatccccattaccactaagcgtaagcgagtggag
tttgcagatgaaagtcagacggagactcaggagctggcactcacccagtcatggagggag
attttgggacctccacctccaactggaaacacacgagaggagcgacttgtctggctccgg
tttcacaagaagaagtgggagcttcaagcccgtcagcggcgggagcgcaataagaagcgc
cgtcttgcagatggagagccacttccagcaggtggtggagctatccgaggtggtccaagc
actggattgggtagctttttgaggagaactgctcgtagcattctagacatgccctggcaa
atagttcagattgcagagacaagtcaaccaggcctgttcaaactgtgggcagtgattggc
accgacctccactgtatgaaactcaacatcccgcgagttttctatgtgaatcagcgtgtg
cctaaacaggatgatggagcactttacagaaaggttaaccggattctgccacgttcaaat
gtggtgtaccatctatatcagtattcagtacctgaagacatgtatcaggaacatatcaat
gagatcaacgcagacctctctgcaccagatattgaaggtgtctatgagacacaggtcccc
ttgctctttagggctctagttcagcttggatgtgtctgcatggtaaataaacagctggct
caacagattgctggcagagaggctgacacctttgacctagaacacctggagatgagatca
ttggctcagtttagctacctggaacctggcagcatcagacacatctatttgtaccatcat
ggacatggcaacaaggcactgtttggcctcttcattccatcccagagaaaggccagtgtc
tttgttctggacacagttcgaagcaatcaaatgcctaatctgacggctctttactcagct
gaaaggttggcacttgttgacaaagttggtgaagaattgatgccaccggacaaacacaat
tttgaagtgcgagctgagaatgaccccaaaactgtctatcgtgcacttcagagagctctt
ctaaactataaggatgaacgtcgtggtcccactttgattgccatccaatctaactgggac
ttaaagcgcctatcaagtggaatgccagttttagaagaatttcctgttgtaccagtacat
gtggttgatgagatcagttacagtgttttggactggcaacgccatggggcacgaagaatg
cttagacactacctcaatctagacagctgcttatcacaagcctttgaaatggctagatac
tatcatctgccagtgggtaatcttccagaagacatgtccatttttggttcagacttgttc
ctagcacgtcatctcaaccgtcacaatcatttactgtggctgtcacccactgctcgtccg
gaccttggtggtaaggaggctgatgatagtcgtctagtgatggaaagtgatgaaaagagc
tctgtggaaatcaattcgcctggatgttattctacagtttgtgtagagctggacttgcag
agcctagcagtcaataccatcctgcagtctcaacatgtcaatgatatggagggatgtgcc
agccttggagtgagctttgatgtgatccagacagcctccctagaagatatgatggcagga
aatcaaggaaccaactctcttgccagttatgatgagactgccctatgttctaatgctttt
aggattctgaaaagcatggtggttggctgggtgaaggaaattacccaatatcataatgtc
tttgctgacaatcaagtgatgcacttctatcgctggctgaggtcacccacctcattaatg
tatgaccctgcactgcatcgcactctgcataacatgatgaagaaagtcttccttcagttg
gttgcagaatttaagcggttgggctccaatgttgtctatgtcaactttaacagaatcatt
ctatgcaccaagaaacgcaggatagaggatgccattgcatatgttgaatacataacaaaa
agtattcattcacgagagattttccattctctctccctctccttctctcgttgctgggag
ttcttgctatggatggatttagccaactatggaggaattaaagggaagctgccatccagt
gtgctgtatggagaggaacaagaaggcagatcagcaagacagcaacaagatggtgatgaa
gatagtgaggatgaggatgagaccaccgacagacctgaagaaggtgatgaagataacgat
gtagaagatgacaatgtggaagacttgatagagagcaactggaacatcatgcagtacctg
ccacaggtggcatcctgtcagaattattttctgatgatcatttctgcatatattgcggcc
atctatcacagcatgaaagaggagctgagacgaaatgctcctggagccactcctattaag
aggagaggtgggagtcagatttctcaagagccattgggagatgccaatgctttacctggg
atgataaccttctcccaggagtatgtgtgcagtgagctcacccagaatttcttcaccatc
acccagaagatccagaaaaaagtaacgggcaccagacatgcaactgaaccttcagagctt
ttccctgtgctcccagggtcccatctaccactcagcaaccctgcactggaattcattaaa
tatgtatgcaaggtcctgtcacttgatgctaacatcactaatcaggtgaacaagctcaaa
agagacctcctgagacttatagatgtgggtgagttctctgaagaagcccagtttaaagac
ccctgccaatcctatatcctggcagaagtcatctgtcgtcattgtaatttttgtcgagac
cttgacctctgcaaagatccctcagtggttcaggaaggttctgttacacagcagtggttc
tgctccaactgccacaacccatacgagaccgataacattgagatggcacttgtggaggca
ttacagaagaaattaatgacttacactctccaggacctggtttgcatgaagtgtaaaggg
gtgaaagaagctaatatgccaatctactgcagctgtgctggagatttcactcttgcattc
tctacaaagggcttttcggagcaacttggcgtctttcaaaacatagccagtcactacaac
atgccttttctaaaggagaccatcacatggctattgcagatgagccctcagctaagcaaa
gaaaaggcttga
DBGET
integrated database retrieval system
