Polypterus senegalus (gray bichir): 120541077
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Entry
120541077 CDS
T08668
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120541077 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120541077 (exosc5)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120541077 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF364
DUF6802
Motif
Other DBs
NCBI-GeneID:
120541077
NCBI-ProteinID:
XP_039628291
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All DBs
Position
12:complement(31382683..31407798)
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AA seq
228 aa
AA seq
DB search
MVCLPPDGGAHKFRHMADRRLREFGCEQNLLSRPDGSASFVQGDTTVVVGIYGPAEVKVS
KESYDRATLEVILKPKVGLPGVAERSREQFIRETCEAALLTALHPRTSIVLILQVIHDDG
SLLSCCLNSACMAAMDAGLNMRCLFCGVTCAIDLDGNIILDPTAKQEKESRAVLTFAIDS
VERQVMMSSTKGAFTTAEFHQSIAICQKAAESIFQFYRDSVGRRYSKS
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggtatgtttacctccggatggtggggcgcacaagttcagacacatggcggacaggcgt
cttagagaatttggctgcgaacagaacttactgtcccggcctgatgggtctgcgtcattt
gtacaaggagataccactgtggtggtgggcatttatggtccagcagaggtaaaggtcagc
aaggaaagctatgaccgagcaactctagaggttattttgaagcccaaagtgggtctgcca
ggtgtggctgaacgtagtcgtgagcagtttattagagaaacatgcgaagctgctttgttg
actgcattacacccacgtacgtccattgtattgattcttcaagtcattcatgatgatggc
tctctgctttcatgctgtctaaattctgcctgcatggcagccatggatgcaggattaaat
atgcgctgcctcttttgtggagttacatgtgccattgatttggatggaaacatcatcttg
gaccctacagctaagcaagagaaggagagtcgggctgtgctgacctttgcaattgacagt
gtagagcgtcaagtaatgatgtcgtcaacaaaaggagcattcaccactgcagagtttcac
caaagcattgctatctgtcagaaggcagcagagagcatattccagttctatcgagactca
gtgggacgtaggtactccaaatcctga
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