Polypterus senegalus (gray bichir): 120541964
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Entry
120541964 CDS
T08668
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120541964 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120541964 (cnot6a)
Enzymes [BR:
psex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120541964 (cnot6a)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120541964 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120541964 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
120541964
NCBI-ProteinID:
XP_039629916
LinkDB
All DBs
Position
13:complement(10811199..10915661)
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSNWAELEISGKVKSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNFLLDNLSGSAKRIPTEQPPPSRSWIVLQE
PDRAHPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILSCSADIISLQ
EVETEQYFHFFLMELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFNLVQKHT
VEFNQLAMANSEGSEPMLNRVMTKDNIGVAVLLELRKELIELSSGKPLHGIERQLILVAN
AHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKLSSVSGETNAIPLVLCADLNSLPD
SGVVEYLTTGGVDITHKDFKELRYSDCLTNFNCNGKNGTSNGRITHGFKLKSAYENGLMP
YTNYTFDFKGVIDYIFYSKPQLNVLGILGPLDHHWLIENNISGCPHPHIPSDHFSLFAQL
ELILPHLPSVNGVHLPGRR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatccgccagacccacggcggatgtacacaataatgtcttct
gaagaagcagccaatggaaagaaatctaattgggcagagttagaaatcagtggaaaagtt
aaaagtttaagcactgctttgtggtcacttacgcacttgacagcattacatctcagcgac
aattccctttcacgtataccgccagatattgccaagcttcacaatctggtgtacttagac
ttgtcatccaataagatcagaagtttaccggctgagctcggaaacatggtgtcactcagg
gaattgcttttaaacaacaacctgttacgggttctaccttttgagctgggaaaactgttt
cagttacaaacactggggttgaaaggaaacccacttactcaagacatcctgaatctttac
caggaaccagacgggactcgaaggctactgaatttcttgcttgataatttgtcaggaagt
gctaaaagaattccaacagaacagccaccaccgtcaaggtcatggattgttttgcaagag
ccagaccgagcccatccctcagccctgttttctgttatgtgctataatgtactgtgtgac
aaatatgctacccggcagttgtatggctactgtccatcttgggctttaaactgggagtac
aggaagaagtcaatcatgcaggaaattttaagttgcagtgcagacataataagtcttcag
gaagttgaaactgagcagtactttcatttctttctaatggaactgaaggaacagggttat
gatggattttttagcccaaaatcccgagcgaggacaatgtctgagtcagataggaaacat
gtggacggttgtgcaatattctacaaaacagaaaaatttaacttggtccaaaaacatact
gttgaattcaaccaactggcaatggccaactcggaaggttcagaacccatgttaaacaga
gtcatgactaaggacaacataggtgtggccgtactgttggagctacggaaagagctcata
gaactgtcttctgggaaacccctccatggaattgaacggcagctgattctagtggctaat
gctcatatgcattgggatccggaatattctgatgtgaaattggtccagacaatgatgttc
ctttctgaggtgaaaaacattatagacaaggcttctcgaagtctaaagctatcttcagtc
tctggtgaaactaatgccattccacttgttctgtgtgcggatcttaactccttgccagat
tctggtgttgtggagtacttgactactgggggagtagatataacacacaaagattttaaa
gagcttcggtacagtgactgtctcaccaacttcaactgtaatggaaagaacggaacttcc
aatggaaggattactcatggtttcaagctgaagagtgcctatgagaatggcctgatgcct
tacacgaattacacttttgactttaagggtgtaatcgactatattttttactccaagcct
cagcttaatgtactgggaattcttgggcctctggaccaccactggcttattgagaacaat
atcagcggttgccctcatccacacataccttctgaccatttctctctttttgcacaactg
gagctcatactaccccatctgccatcagtgaatggagtccaccttcctggaaggaggtag
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