Polypterus senegalus (gray bichir): 120542029
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Entry
120542029 CDS
T08668
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120542029 (rbbp6)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120542029 (rbbp6)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
U-box type E3
120542029 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-C3HC4_2
zf-CCHC
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
120542029
NCBI-ProteinID:
XP_039630050
LinkDB
All DBs
Position
13:complement(123002142..123038523)
Genome browser
AA seq
1710 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHIALCDLKKQIMGREKLKAADCDLQITNAQTNEEYTDD
AALIPKNSSVIVRRIPIGGVKTASKTYVIDRSEPSSGPSKAIDDSAASISLAQLTKTANL
AEANASEEDKIRAVMSQSVFDYDPIHYLKKPLGPPPPTYTCFRCRKSGHYIKNCPTNGDK
NFEAVPRIKKSTGIPRSFMVEVDDPNMKGAMLTNTGTFAIPTIDAEAYKIGKKEKPPFLP
QEQSSSSEEEDPIPDELLCLICKDIMTDAVVIPCCGNSYCDDCIRSFLLESDEHICPTCH
QSDVSPDALIANKFLRQAVNNFKNETGYTKRIRKGQSCQTGQVQNQVRQQLQRPMQSRGS
RQQDPLISNAPAADVASSTAQPQVVQQTPVLPSTLPSASPSLQVNVESSSPPPDVSSSVP
SPQPAVKQEDPPPTSAPVKDQDKSALSNAPPVTTSADASVTTVSLPKGYQVPVLGQPLPH
GHCIPTTGQPIRSSSARPGTSRQAWETSASRGRPPSERPSRTQAVTLPSNAPVYAPPPSL
FPPPPPHSLPLATGVPPPQFPPQFPPGQPPNSGYSVPPPGFPPAPATVNTPWVPPGTNAP
LGNTIPSITQAPPLSREEFYRQQRRLKEEEKKSKLDEFTNDFAKELLEYRKIQKERRRSY
SRSKSSYSGSSFSGSSYTYSKSRSRSSRSYSRSVSRSHSRSYSRSPVYPRRGGGGRSRSY
RSRSRSHGYHRSRSRSPAYRGGGGGGGGGGGGGGGVEEEGGGGGGGYRSRSRSPTYRTHS
PNKRPVPPPQPEGEREYYNRYREAPPYDLKAYYGRSVDQRDPYERERYREWERKYREWYE
KYYKSYTHSAGNPPRQRPPPSNREHFTPERFAPLGPRRDNSPYGRGRKDDYPPIGLGQRV
HNIPAAYPERFMLKESHGCGKELSKTSKEKEAENLPGDAKSSKHKKHRKRRKGDESELFG
TAPQELPRKPVAGDDVKGESLLLSLSRDDATPVRDEPMDSASISYKAVAERDKKEKVKAK
VEKVKRKPDIPATKKDSQVKPLKPPERDKSPRTEPPPKKPKEEPSQKVESTKSHGSQREA
PASRKAPTKPVKHHNELKATKEEKTKEKRDQTREAAKVEKPPNKEEKPKKDSDEKASKTT
EAKPEKKKRKDDKDPEVPSIKSPRVEAAEVPKPTPKPKVESEADKHLEKPAVKEEKSAPL
RKIKINREIGKKIVAGESSVPVVEKNRPEKTKPKLRRKIQAPDSLLVDYTSTSSTGGSPV
RKQEDIKKTVVKTLEEYNNDSSAPAENEIVMIKVPRSKWEKEDYESEEDEGKETQATASI
KPTAPPKPSGDFKIPAKDSPKPFKEPAGEELTPEAKTTKAAVAVSEKDKAKDKESTTDKR
KEREKKPERTADQSSGKNGSTASGSSKDRTVEKTETAPRVPQNKEGAPSITSDKKCESAV
ASKEHSGSKRKEDKLKESIKKKDSPSAGRESHPNLKGRDRDAHSDPPRKTTTTESKRPEQ
SPVRERKPRTDPKIAPSSKKPVSEEPRADRAHGKDARTSRDHNLHKPHRTDSPEGRSERE
HAKNKQPLVRSSRLSSDLTKETDEAAFVPDYSESDSESDLSPHSSKHAKEKGPTAAPGES
QGHSSASPSDSPARSRSSSASSAGSQDSKKKKKKKDKKKHKKHKKHKKHKKHTGLETETE
LKGQKHKHKKKKSKKSKDKEKEEPKAKVPA
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcgtgcactacaagttttcatccaagctcaactatgatacagtcaccttcgat
ggcctccacatcgctctctgcgacctgaagaaacaaatcatgggaagggagaaactgaag
gcggccgactgcgacctacagatcaccaatgctcagacaaacgaagaatatactgatgat
gctgccctcattccaaagaattcctctgtgattgttagaaggattcctattgggggtgtc
aaaaccgccagcaaaacatatgtcattgaccgttctgaaccttcaagtggaccatcaaaa
gcaattgatgattctgctgcttctatttctctggcccagctaacaaagactgccaatctg
gctgaagcaaatgcatccgaggaagataaaatcagagctgtgatgtcacaatcagttttt
gattacgaccccatacattacttgaagaaacctctgggaccaccaccaccaacttacacc
tgttttcgctgtcgtaaatcaggacactacattaaaaattgtccaactaatggggacaaa
aattttgaagctgtaccaaggattaaaaagagtactggtatccccagaagttttatggtg
gaagttgatgatcccaacatgaaaggggcaatgcttaccaacacaggaacatttgcaatt
cccactattgatgcggaggcctataaaattggaaagaaggagaaaccaccgtttttgcca
caggagcagtcttcgtcatcagaggaagaggatcccataccagatgagctactctgtctc
atctgcaaggacattatgacagatgcagttgttatcccctgttgtggaaatagctattgt
gatgactgtattcgatcattcctactagaatcagatgaacatatttgtcctacctgtcac
cagtctgatgtttctccagatgccttgattgcaaacaaattcttacgtcaggctgttaac
aattttaaaaacgaaactggatacaccaaaagaattcgtaaggggcaaagctgtcaaact
ggacaagttcagaaccaggttagacaacagctgcagcgtccaatgcagagccgtggaagc
aggcagcaagatccactaatttctaatgcaccagctgcagatgttgcttcatctactgct
cagcctcaagttgttcaacaaacacctgttttaccttcaacgcttccatcagcttcacct
tctctacaggtgaatgtagaatccagtagccctccacctgatgtgtcatcttctgtcccc
tcacctcaacctgcagttaagcaagaagatccaccccccacctcagctccagtaaaagat
caagataaatctgcactgagcaatgctccaccagtaactacttctgcagacgcatctgtc
accactgtctcattgccaaagggatatcaagtaccagtgcttggtcagccacttcctcat
ggccactgcatccctaccacaggacagccaattaggtctagctcagctcgccctggaaca
agtcgccaggcctgggaaacatcggctagcagaggaagaccacctagtgaaagaccctca
agaacacaagctgttaccttacccagcaatgccccagtgtatgcacctcccccatcactc
tttcctcctcctcctccacattcgctgcctttggccacgggggtgccccctcctcagttt
ccaccacagtttcctccagggcaaccaccaaatagtgggtacagtgttcctccccctggc
ttccctccagcaccagcaacagtcaacaccccttgggtacctcctggaacaaatgcgcca
ttgggtaacaccattccctcaatcacacaggcaccccctctctccagggaagaattttac
agacagcagcggcggttaaaggaggaggagaagaaatccaaacttgatgagttcaccaat
gactttgccaaagagttgctagagtaccgaaagatccaaaaagagagacggcgctcatat
tccaggtccaagtcatcttatagtggctcttccttcagtggaagctcctacacctattca
aagtccaggtcccgctcctctcgctcctattccagatctgtgagtcgctcacattcacgg
tcttactccagatctccagtctatcccagaagaggagggggaggaaggagtcgaagttac
cgttctcgatcacgttcccatgggtaccaccgctcccgctccaggtctccagcctacagg
ggaggaggtggaggaggaggcggaggaggaggaggaggggggggggtggaggaggagggt
ggtggaggtggtgggggatatcgttcacgatcgcgatcccctacttaccggactcattct
cccaataaacggcctgtgcctccaccccagcctgaaggagaaagagagtattacaacagg
taccgagaggctccaccctatgatttgaaagcctactatggccgttctgtggaccagagg
gacccctatgagagagagagatatagggaatgggagcggaagtacagagaatggtatgaa
aagtactacaagtcctatacccacagtgcaggcaatccacctcggcaaagaccccctcct
tccaacagagagcactttactcctgagcgctttgcaccacttgggccaagacgtgataat
tctccatatggtagaggacgtaaagatgactatccacctattgggttgggccagagggtc
cataatattcctgctgcttaccctgaacggtttatgttaaaggaaagccatggctgtggc
aaggagctgagcaaaacttcaaaggagaaagaggcagaaaatcttcctggggatgcaaag
agttcaaaacacaagaaacacaggaagagaagaaaaggtgatgaaagtgagttatttgga
acagcaccccaagaactgccacgcaagcctgtagccggagacgacgtcaagggagaatct
ctactgctttccctgagtcgagatgatgccacccctgttcgagatgagccaatggacagc
gcctccatttcatataaagcagtagcagagagagacaaaaaagaaaaggtcaaagccaaa
gtggaaaaagtaaaacgcaaaccagatatcccagccactaaaaaggactctcaggtgaag
ccactcaagcccccagagcgagacaaatcccctagaactgagccaccacccaagaagccc
aaagaggaaccatcccagaaagtagaatcaacaaagtcacatgggtcccagagggaagcc
ccagcatcacgcaaagcacccactaaaccagtgaaacatcacaatgagcttaaggcgaca
aaagaagagaaaaccaaagagaagcgtgaccagacaagagaggcagcaaaagttgaaaag
cctcccaacaaagaagagaagcccaagaaggacagtgatgagaaagccagtaagaccaca
gaagcaaaaccagagaagaagaagaggaaagatgacaaagatcctgaagtgccttctatc
aagtcaccgcgagttgaggcagcagaagtacctaagccaacacccaagcctaaagtagaa
tctgaggcagacaagcacttagaaaagcctgctgtcaaggaagagaaaagcgctcctctg
aggaaaatcaaaatcaaccgtgagattgggaagaagattgtggctggagagagctctgtt
cctgtggtggagaagaatcggcctgagaaaacaaaaccaaagttgcggagaaaaatacaa
gctcctgattccttgcttgtagactacaccagcacaagttcaacgggaggaagtccagtg
aggaagcaggaagatatcaagaaaacggtagtgaagactttggaggaatacaacaatgac
agttctgcaccagctgaaaatgaaatagtgatgattaaggtgcctcggtcaaaatgggag
aaagaggactacgaatcagaagaagacgaagggaaggaaacacaggcaacagcgagcatt
aagcccacagctcctccaaagccatctggggacttcaaaattcctgccaaggattctcct
aaaccatttaaagagcctgcaggagaagaattgacaccagaagccaagactacaaaagct
gcagtggcagtgagtgagaaagacaaggccaaagacaaggaatcgacaactgataagaga
aaagagagggagaagaagccggagcgaactgctgatcagagctctgggaaaaatggctcc
actgcctctggctcttctaaagacaggactgtggaaaagaccgaaactgcacctcgggtg
ccccaaaataaagagggagctccttccatcacctctgacaagaaatgtgagtctgcagtg
gccagcaaagagcattcaggttccaagcgtaaggaagacaagttgaaggagtccataaag
aaaaaagactctccctctgcagggcgggaatcccacccaaatttaaaaggcagagaccgg
gacgctcactcagatccacccaggaagacaacaaccacagaatctaagaggccagaacaa
agccctgttagggagcggaagccacgaaccgaccccaaaattgcacccagttccaaaaag
cctgtttcagaagagccacgagcagaccgggcacatggaaaggatgcacgcaccagtaga
gatcacaatctccacaaaccccaccggactgattctcctgaaggcaggtctgagcgggag
cacgcaaagaacaagcagccgcttgtgcgatccagtcgcctctcctctgatttgaccaag
gagactgatgaggcagcctttgtgcccgactacagtgaaagtgacagtgagagtgacctc
tcgccacacagtagcaagcatgcaaaagagaaggggccgacagctgcccctggtgaaagc
cagggccacagcagtgccagcccgtctgacagcccagcacgcagccgcagtagcagtgcc
agttctgcaggcagccaggacagcaagaagaaaaagaagaagaaggacaagaagaaacac
aaaaagcacaagaaacataaaaagcacaagaagcacactgggctggaaacagaaacagaa
ttgaaaggtcaaaaacataaacacaagaagaagaagtcgaaaaaaagcaaagacaaggag
aaagaagagcccaaggcaaaggtgccagcctaa
DBGET
integrated database retrieval system
