KEGG   Polypterus senegalus (gray bichir): 120542137
Entry
120542137         CDS       T08668                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120542137 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psex03019]
    120542137 (exosc1)
Messenger RNA biogenesis [BR:psex03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     120542137 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     120542137 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N S1_RRP4
Other DBs
NCBI-GeneID: 120542137
NCBI-ProteinID: XP_039630254
LinkDB
Position
1:272855205..272878275
AA seq 194 aa
MSPWKVCVPGERLCSTDVCKAGSGTYTRHSFIFASLAGYVVKKNEEEELPVISVVRETEA
QLLPDVNAIVTCKVTSINPRFAKVHILYVGSTPLKNKFRGTIRKEDVRATEKDKVEIYKC
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGVPMVPISWCEMQCPRTHAKE
FRKVARVQPEYLMP
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtctccgtggaaggtgtgtgttcctggtgaaagattgtgtagcactgacgtctgtaaa
gctggaagtgggacctacactcgacacagctttatctttgcctctcttgcgggctatgtg
gtaaagaagaatgaggaagaagagctgccagtgatctcagtggtcagagaaacagaagcc
cagctattgcctgatgtaaatgcaatagtaacatgtaaggtgactagtattaacccacgg
tttgccaaagttcatatcctctatgttggctcaacccctttaaaaaataaattcagagga
acaataagaaaagaagatgtaagagctacagaaaaggacaaggtggagatttataaatgt
ttccgacctggggatattgtcctagcaaaagttatctccttaggtgatgtgcagtccaac
taccttcttacaacggcagagaatgagcttggggttgtggtggcacatagtgaggcaggt
gtgccaatggtgccaatcagctggtgtgaaatgcagtgtcctagaactcacgcaaaagag
tttcggaaagtggcacgggtacagcctgaatacttaatgccataa

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