Polypterus senegalus (gray bichir): 120542155
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Entry
120542155 CDS
T08668
Symbol
pcdh12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psex04515
]
120542155 (pcdh12)
Cell adhesion molecules [BR:
psex04515
]
Cadherins
Protocadherins
120542155 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Sh_2
Motif
Other DBs
NCBI-GeneID:
120542155
NCBI-ProteinID:
XP_039630324
LinkDB
All DBs
Position
13:complement(26470597..26483329)
Genome browser
AA seq
1166 aa
AA seq
DB search
MYLRKTRAAELSLFLLGCLCSRSLSNSATVFSAAYRVNEEVSSGTVVGKLEDVLPLEREN
GPAMKFQVSSDTGAIPFQVSESDGAVSTLGRLDREALCTNDATCVIKFNVFYQRGFTFGV
FHIQVEVLDINDNSPSFESLEQQIEISESANLRTRIPLDRALDPDWGPNGLQTYSLSANP
HFALDVITGTGGEKHAELVVIKELDRELQSSFKLFLTAWDKGNPPKSGTTLVRVNVLDSN
DNSPIFEDNLLTAELREDAQKGTMVISLKATDPDQGANGEVEYSFSKHAPQEVFNLFHID
AKTGIVTLCGVLDYEKKQAYEIDIQAKDLGPSPIPAHCKLHIKVLDVNDNIPVIHLSWVS
SGMDVAVIPENAALDSFLALMVVSDADSGENGNVQCEIHHGLGHFRLQKTHGDNYMIVTN
ASLDREKLDWYNLTLVAKDNGTPSFSAIKHLAVHVADENDNAPVFSSNFYMVSLKENNQR
GIQVINMKASDADLGMAGTITYSMKEPGLSPAFAVHPSNGTVIAQKPVDFEERQNFTLII
EGIDKGSPPLSSSATLFIRVQDINDNYPIIVEPSPKNGVATVSVPINTDTGEIVSELDGD
HMRNCVPPKLADCVKADGYPAARIRATDLDSGINGELRYRIKSQSDSSIFTINEITGQIF
VNSSNTTELLGKVYLLDVTVTDMGSPALTTTVVLQLTFLSLADHLKNSSSGGQHQLSVTM
IVLICTIAGLLLIFLIAAGLSTLCHTEKRRDNRAYNCRHAESTYTRHPRRPQKQIHKAEI
HLVPVLRGRPAESGDGGISQALPRPSDDTMDVPSPSPPCQFNLSPSLSRTLRNQTFPDPN
DTLTSCRTLRKVDNESLLFTPSGSCKTLRKPKDINLHNTEDSMPVHADSSTIKMSGSAGK
QDPSSPVLYRTLRRQKNTENKTRAENEDQQRILQNLFRLSMAALAEYNPTEVTAASSQVQ
QISQLLSLLHKGQFQPRPNFRGNKYSGRTGRSGGQDTDWLSTKDSGHGESEAGDVDWETG
RDSPTDPLLAEGMETLPHPTDDVFVDLPDPAWMARLSLPLTADYRENIFVPQEPMSLAAP
AVPIPADGNTVFSTFGKSHTASPTLTGNLLSEVSTLFEMLLSQKAESQCQPSAEVLYRLS
AAYRRSLEGEDKVTGGTGGYRDSGEA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgagaaagacccgggctgccgaactctccctcttcctcctaggctgcctttgc
tctcgctcgctttccaactccgctaccgtctttagtgcggcataccgggtgaatgaagag
gtatccagcgggactgtggtcggcaaattggaggatgttttgccactggaaagagagaac
ggccctgctatgaagttccaagtctcgagtgacaccggggcgattccgtttcaagtttca
gaaagtgacggggcggtcagcaccttgggccggttagacagagaagccctgtgcacgaat
gatgcgacctgcgtaatcaagttcaacgttttttatcaaagaggatttacgtttggagtt
tttcacatacaggttgaagtgttggacataaacgacaacagtccttcatttgagagcctg
gagcagcagatcgaaatttcggagagtgctaacttgaggacaaggattccattggatcga
gcgctggacccggactgggggccaaatggcttacagacttactctttgtcagccaaccca
cactttgcattggatgtcatcaccgggactggaggggaaaaacatgcagagctagttgtc
atcaaggagctggacagggagcttcagtcctccttcaaactctttctcacagcttgggat
aaaggaaatcctccaaaatctggcaccacattagtcagggtgaatgttttggactcaaat
gacaacagtcccatctttgaagataacctattgacagcagagctgagagaagatgcccag
aagggaacaatggtcattagtcttaaagctactgatcctgaccaaggagccaatggagag
gttgagtattctttcagcaaacatgcacctcaggaagtatttaatctcttccacattgat
gccaagacaggcatagtgaccctgtgtggcgttttggactatgaaaaaaagcaggcatat
gaaattgatatccaggcgaaagatttggggcctagtcccatcccggcacactgtaaactt
catatcaaagttttagatgttaatgataacattcctgtcatccatctctcctgggtatcc
tccggcatggatgttgcagtgatcccagaaaatgccgcccttgatagtttccttgctctg
atggtggtgtcggatgcagactcaggtgaaaatggaaatgtgcaatgtgaaattcatcat
gggcttggacatttcagactacagaagacccatggagataattacatgatagtgaccaat
gcctccttggacagggaaaaactggactggtataatttgaccctagtggccaaggacaat
gggacgccatctttttctgcaattaaacatttggctgttcatgtagctgatgagaatgat
aatgctcctgtcttctcaagtaatttttacatggtgtctttaaaagaaaacaaccaaaga
ggaatccaggtgattaacatgaaggccagtgacgctgacttaggcatggctgggaccatt
acatactccatgaaggagccaggcttgtcaccagcctttgcagttcatccttcaaatggc
actgtcattgcacaaaagccagttgactttgaagaacggcagaactttacactcattatt
gagggcatcgataaggggagcccaccactctcaagcagtgctacactttttataagggtg
caagacatcaatgacaattatcctattattgtggaaccatctcctaagaatggagtggca
actgttagcgtccccatcaacactgataccggtgagattgttagtgaactagatggtgat
cacatgaggaactgtgtgccgcccaagctggcagattgtgttaaagctgatgggtatcca
gcagcacgcatccgggccacagatttagattctggtattaatggggaactgcgctacagg
ataaaaagtcagagtgacagcagcatatttaccattaatgaaattactggccagatcttc
gtcaatagcagcaataccaccgaactgcttggaaaggtctaccttcttgacgtcacagtc
acagacatgggctctcctgcactcaccactactgtagttttacagttgacgttcctcagc
ttggctgatcatctgaagaactcatcttcgggtgggcaacaccagctcagtgtcaccatg
atagtgctcatctgcactattgccggactgctcttgatatttctaatagctgcaggcctg
agcacgctgtgccacaccgagaaacgacgggacaaccgggcttacaactgcagacatgcc
gagtcgacctacaccagacacccgagacgtcctcaaaaacagattcacaaggctgaaatc
cacttagttccagtgctaagggggcgaccagcagagtccggtgacggtggcatcagccag
gctctgccaaggccctcagatgacaccatggatgtgccttctccttccccaccttgccag
tttaatttgtccccttccttgagcaggactcttagaaaccaaaccttcccagatcccaat
gatacgctgacatcatgccggactctacgtaaggtggacaatgaaagccttctctttact
ccctctggctcttgtaaaacactccgtaagccgaaggatatcaacttgcacaacactgaa
gattccatgccagtccacgctgacagcagcacaataaagatgtcaggaagtgctggcaag
caggacccttcatcacctgtcctctatcgaaccctgcggagacagaagaacacagaaaac
aaaacgcgagctgagaacgaagaccagcaacgcattctccagaacttattccgcctctct
atggccgccttggcagaatacaaccccactgaagtgacggctgcatcatcacaggtacag
cagatctcccagctgctctccttgctgcacaagggccagtttcagccaagaccaaacttc
agaggaaacaagtactcaggaagaactggcaggagtggaggacaggataccgactggctg
agtactaaggacagcggccacggagagagtgaagctggtgatgtggactgggaaactgga
cgtgactccccaactgaccccttgctggcggaagggatggaaaccttgccccacccaaca
gatgatgtctttgtggaccttcctgatcctgcatggatggcacgcctttccttgcctctc
actgcagactacagggagaatatctttgtccctcaggagccgatgtcactagcagcaccg
gctgtgcctatccctgctgatggaaacactgtattttctacatttgggaagagccatact
gcctctccaacactaactgggaacttactctctgaggtcagcaccctatttgagatgttg
ctgtcccagaaggcagaatcacaatgccaaccatctgccgaggtcctgtacagactttct
gctgcctaccggcgctcattggagggagaagataaagtcacagggggcaccggtggctac
agagattcaggagaggcctaa
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