KEGG   Polypterus senegalus (gray bichir): 120542261
Entry
120542261         CDS       T08668                                 
Symbol
gemin5
Name
(RefSeq) gem-associated protein 5 isoform X1
  KO
K13133  gem associated protein 5
Organism
psex  Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:psex00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psex03019]
    120542261 (gemin5)
   03041 Spliceosome [BR:psex03041]
    120542261 (gemin5)
Messenger RNA biogenesis [BR:psex03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     120542261 (gemin5)
   mRNA cycle factors
    P-body specific factors
     120542261 (gemin5)
Spliceosome [BR:psex03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    120542261 (gemin5)
SSDB
Motif
Pfam: GEMI5_RBS TPR_GEMI5 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_RIG_2nd Beta-prop_WDR5 WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_HPS5 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WD40_Gbeta Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_LRRK2 WD40_RFWD3 Beta-prop_SPT8 TPR_Sec16 TPR_IF140-IFT172 Lgl_C TrAA12
Other DBs
NCBI-GeneID: 120542261
NCBI-ProteinID: XP_039630515
LinkDB
Position
13:complement(30608888..30649782)
AA seq 1507 aa
MHERLLPPSPNWYCSRCCDVNAKGLLGFGGKNSVYLLSVTAASPVVSGELKGHTERVSGF
AFCHYPGQDDICASCSDDGTVKIWDSYKQIKLKEHKNHQSTITALHWSPLVKDLVVSGDE
KGIVICYWYNRNDTQCFFPEPRNIFCLSCSPHNENHIAIGYKDGMVVIIDISRKSEVIHR
LRGHDDEIHSLAWCHQPLEEFYVRHDEVLESEVASGGNGVDLAGKECYLASGSKDQTVRV
WSTTRGKGVMTLKLPFLKRRGASVDPSVKERLWLTVHWCKGRSTQIVSSCFGGELILWDL
TKSGKQKWTLFGSSVDGQNHTRIAFNLCSILAEDRELVFSTSMDRDVKCWDLSTLDCCWT
LPSLGGFVYCLNFSPLDTGSLAVGVGDNMIRTWNTLTIQNRYDTKIFWQGIKSKVTALAW
HPLKENWLAFGTDDGKVGIFDTYSNKPPQISASYHRKTIYTLAWGPPVPPLSFGGEREKQ
SLTLYSCAGEGTIFQHNAWKLTEEATDIDKVIRETNGIKHKLQAHSDLNWKPDGKILAVG
NEDGSIEIFQALDLKLLCSIQQHHKIINALCWHHGHASQEDASYLLASGSNNAIIYVHNL
KNLIVSPPDTPITMMESYRTLTGHTAKITGLAWSPHHDGRLVSVCYDGTAQLWDVMKDEP
LCNYRGHKGRLLCVQWSPVDPDVIWTGGDDFTVQEWCVSKQEHLKPPKGKKGIELEKKRA
SQAKPKARKKKKTSVKECDKKEGSDVVNGVDESCSTRTEDIASGADEDEEEVEKKDPHLT
VDSCPTQTKVLPNDTGYHRDVQVTAASEKNKPAVKSWSGKCDSVKEEKKREKQAEMQIPV
KKKKARSILPLSTCMDHKSKEEQLQDCLTLATVQHSGELSSQCIPGSGAHIHLGLFEKRD
ALYKMFDEEGRSHIEGGHFDSLFYLLLWKGDLAGALQIATEKGELTDHLVAISSMAGYQV
WARTVEAFVKQLCFQEQFVKAASYLLSVHKVYEAIDLLKSQQLYREAIALAKSRLPSEDP
TLKDLYISWALVLERDGHYAAAAKCYLASDSTYEAVKVIAKKSDAMSLRTAAEIARVVGE
SDLSHTLSLRIAKEMLLAEDWLGAQDVLRAQGKLLGHQLIFATNELFYISLETAKLVKRS
STSAHSWTVGQDPFIETVIKLWEAEFNVSSKDCEKMHLLYQQLKSVENPPASVNVPFKQL
LFHLSHDITVIIVSFLRSAWSETISDILGVVSRCSEAGNYCLMREVCKLLLPKGIDSILS
IKDMLDSPDVDTLAASHSLEAFVAYIQLYEMWWKGSGTELQLENEVQRGSIDAGEMELMN
DESGDHVKENSTNVNGASDECSPKKELCHSKQESSLSFCRSLLSETHAALQTTQHLIKEI
QEKLSSMVHFHMRAAESKKNGELCSENPETDLTGPAQAPVAQSIEEPESLPSLIALLSEY
NKTLTHIPDHIKHNPFPDVLECCLILLYMERSVPASVPEDLAKQARSLIQKYGTTVTYKK
AYHSFFN
NT seq 4524 nt   +upstreamnt  +downstreamnt
atgcacgaaaggcttcttccaccttccccgaactggtattgctctcgctgttgtgatgtc
aacgccaaaggacttttggggtttggaggaaaaaattcagtttatttgcttagcgtcaca
gccgcatctcctgtggtgtcaggtgaactcaaaggccacactgaacgtgtctctggtttt
gcattttgccattatcctggtcaagatgacatctgtgcaagttgttcggatgatggaact
gttaaaatctgggattcctataaacaaataaagcttaaagaacacaaaaaccaccagagt
acaataacagcactgcattggtctccgcttgtgaaagacttggtggtttctggtgatgag
aagggcattgtcatttgttactggtataacagaaatgatacccagtgcttcttccctgag
cctagaaacattttttgtctgagctgttctcctcacaatgaaaaccacattgctatcggc
tataaagatggaatggttgtcattattgacattagcagaaaaagtgaagtaattcacaga
ttaagaggccacgatgatgaaatacactccttagcttggtgtcatcaacctttagaagag
ttttatgtacgccacgatgaagttttagagtcagaggtagcgagtggaggaaatggagta
gatttggcaggaaaagaatgttacctggcatcaggaagcaaagatcagacagtgagggtg
tggagcacaacacgaggaaaaggtgttatgacacttaaacttccattccttaaaaggagg
ggagcaagtgttgaccccagtgttaaagagcgtctttggttaactgtgcattggtgtaaa
ggacgatcaacacagattgtttccagctgttttggaggtgagttgatactctgggatttg
actaaatctggaaagcagaaatggactctttttggatcatctgtagacggacagaatcat
actaggattgccttcaatttgtgctcaatcttagctgaggatagagagcttgtcttcagt
acttcaatggacagagatgtgaaatgctgggatttgagcacccttgattgttgctggacc
ttaccttctcttggtggatttgtctattgcttgaacttttcccctttggatacaggatca
ctggcagttggagttggggataatatgattaggacctggaatacattaacaattcagaat
cgttatgacactaaaattttctggcaagggataaaatccaaagtcactgctttggcttgg
cacccactaaaagaaaactggttggcttttggaacagatgatggcaaagttggcatcttt
gacacctactcaaacaaaccaccacagatatctgcatcttatcatagaaaaaccatttat
acattggcttgggggccacctgtacctcctctttcatttggtggagaaagagaaaaacag
tcattgactctgtatagttgtgctggggagggcaccatttttcaacacaatgcttggaag
ctaacagaagaggctacagacatagataaagttattcgagaaacaaatggaattaaacat
aaattacaggcacacagtgacctaaactggaagccagatgggaaaattctagctgtcgga
aatgaagatgggtcaattgagatttttcaggcattagacctcaaattactgtgttctatt
cagcaacatcacaagatcatcaatgctctctgctggcatcatggtcatgctagccaagag
gatgctagttatttattggcttctggctccaacaatgctattatttatgtacataaccta
aagaatttaatagtatcacctccagatactccaattacaatgatggagtcttataggact
cttactgggcacactgctaaaataactggcctggcctggagtcctcatcatgatggaaga
cttgtatctgtttgttatgatggtactgcacagttatgggatgtgatgaaggatgagcct
ttgtgcaactacagaggtcataaaggacgtctgctctgcgtccaatggtctccagtagat
ccagatgtgatctggacaggaggagatgattttactgttcaagagtggtgtgtttcaaaa
caggaacatttgaaacccccaaaagggaaaaaaggcatcgagcttgaaaaaaagagggcc
tctcaggcaaaaccaaaggcaaggaaaaaaaagaaaacgtcagtcaaagaatgtgataag
aaggaaggatctgacgttgtgaatggagttgatgaaagttgcagtacaagaacagaggac
atagcatctggagcagatgaggatgaggaggaagttgaaaaaaaagatccacatttaact
gttgattcttgccctacacaaacaaaagttttgcctaatgacactggataccaccgtgat
gtacaggttacagctgcatctgaaaaaaataaaccagcagttaaaagctggtctggaaaa
tgtgattctgtgaaggaagaaaaaaagagagaaaagcaagcagaaatgcaaataccagta
aagaagaaaaaagctcgctcaatacttccactcagtacttgcatggaccacaaatcaaag
gaagaacagctacaggattgcttgactcttgcaacagttcaacattctggagaactttca
agtcagtgtatacctggatcaggtgcccacattcatcttgggctttttgaaaagcgggat
gctctgtacaaaatgtttgatgaagaaggtcggagccacattgaaggagggcattttgat
tcattattttacctcctgctatggaaaggagacctagcaggggctcttcagatagccacc
gagaaaggagaactgactgatcacttagttgctatttcttcaatggcgggctatcaagtg
tgggcaagaacagtagaagcatttgtgaaacaactgtgttttcaagagcagtttgttaaa
gctgcatcttatcttctttctgttcacaaagtttatgaggcaattgacctccttaaatct
cagcagctgtatagggaagccatagctttagcaaagtcaagattaccttccgaagaccca
actctcaaggacctttatatctcatgggccttagtcctggaaagagatggtcattacgca
gctgcagctaaatgttacctagcatctgattcaacctacgaggctgtcaaggtaattgcc
aagaaaagtgatgcaatgtcattaagaactgctgcagaaattgcccgtgttgttggagaa
agtgacctgtcgcatacactttcactgagaattgccaaagaaatgcttttagctgaagat
tggcttggtgcccaggatgttttaagggcacagggcaaactactgggccatcagcttatc
tttgccaccaatgaattattttacatttccttggaaacagcaaaacttgttaaacggagc
agcacatcagctcacagctggactgtgggacaagatccttttatagagacagtgataaaa
ttatgggaagctgaatttaatgtatccagtaaggactgtgaaaaaatgcatctgctatac
cagcagctcaaatctgttgaaaatcctcctgcttctgttaatgtgccatttaaacagctt
ttattccatttatcacatgacatcacagtgatcattgtcagcttcttgagatctgcctgg
agtgagacgatatcagacattctgggtgtagtcagccgttgcagtgaagctggaaactat
tgtctcatgagagaggtttgcaaactactactaccaaaaggtattgattccattttaagt
atcaaagacatgctggattctcctgacgttgacactttagcagcttctcacagccttgaa
gcctttgttgcttacatacaactttatgaaatgtggtggaaaggaagtggtacagaatta
cagttagagaatgaagttcaaagaggcagcattgatgctggtgaaatggagctcatgaat
gatgaaagtggggatcacgttaaagaaaattcaacaaacgtcaatggtgccagtgatgag
tgttctccgaagaaggaactgtgccactcaaagcaggaaagcagtttgtcattctgtaga
agtttactttctgaaactcatgctgcactacaaacaacgcagcatttaataaaggagata
caggagaagttatccagcatggtccacttccacatgagggcagcagaaagtaagaaaaat
ggcgaactctgtagtgaaaatcctgaaaccgacctaacaggacctgcacaagccccagta
gcacaaagtattgaagaacctgaatctctgccatcattgatagctttgctgtcagagtac
aataagaccctgactcacattcctgaccatataaagcacaatcctttcccagatgtcctt
gagtgctgccttatcctcctctatatggagaggtctgtacctgcatcagttccagaggac
ctcgccaaacaggcgcgctccttaatccagaaatacggaactacagtcacttataagaaa
gcctatcatagtttctttaattaa

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