Polypterus senegalus (gray bichir): 120542765
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Entry
120542765 CDS
T08668
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex00260
Glycine, serine and threonine metabolism
psex00630
Glyoxylate and dicarboxylate metabolism
psex00670
One carbon pool by folate
psex01100
Metabolic pathways
psex01200
Carbon metabolism
psex01230
Biosynthesis of amino acids
psex01240
Biosynthesis of cofactors
psex04981
Folate transport and metabolism
Module
psex_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
120542765 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120542765 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
120542765 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
120542765 (shmt1)
Enzymes [BR:
psex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
120542765 (shmt1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
120542765
NCBI-ProteinID:
XP_039631350
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Position
13:complement(141367000..141387096)
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AA seq
498 aa
AA seq
DB search
MKIMLRNSLKSAMANTNITNGQSDSKDIWDRHNKMMVEPLRENDQEVYQIIRNEKKRQTC
GLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFVDELERLCQKRALEAYGL
DPEKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIF
FESMPYKVHPDTGYIDYDRLEENARLFHPKMIIAGVSCYSRNLDYARMRKIADENGSYLL
ADMAHISGLVAAGVVPSPFEYCDVVSTTTHKTLRGCRAGIIFYRKGVKSVDPKSGKEIYY
NLEGPINQAVFPGLQGGPHNHAIAGIAVALKQTMTPEFKRYQMQVIVNCKALAAALIELG
YKIVTGGSDNHLILVDLRPKGTDGGRAEKVLEACSVACNKNTCPGDKSALRPSGLRLGTP
ALTSRGLMEEDFKKVAMFIHKGIELTLEIQNSMNPKATLKEFKEKLAGDENCQMKVNQIK
EEVEKFARMFPMPGLTDI
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaagattatgctcaggaatagtttgaaatctgccatggccaatacaaacattaccaat
ggacaaagtgacagtaaagacatctgggacagacataataaaatgatggtagagccactt
cgcgagaatgaccaagaggtttatcagattattaggaatgaaaagaagcgtcagacttgt
ggcttggagctcattgcatctgaaaattttgccagtcgtgcagttcttgaagctcttggc
tcctgcttgaataacaaatattcagaagggtatcctggacaaagatattatggaggcact
gaatttgtggacgagttggaaagactgtgtcaaaaaagggctttggaagcatatggcctg
gaccctgaaaaatggggagttaatgtccagccttactctgggtcaccagcaaactttgca
gtatatactgctttagttgaaccacatggcaggataatgggattagatcttccagatggt
ggccatttgactcatggatttatgaccgacaagaagaaaatttctgccacttccattttc
tttgaatcaatgccatacaaggtacatcctgacaccggctacattgactatgatcgactt
gaagagaatgcccgtctcttccaccctaaaatgataattgcaggtgtgagctgttactcc
cgtaatctggattatgcgaggatgaggaagatagctgatgaaaatggatcttatcttttg
gctgatatggctcacattagtggtcttgtggcagcaggagttgttccttcaccatttgag
tactgtgacgttgtttcaacaactacacataaaactctgagaggttgcagggcaggcata
atcttttacagaaaaggtgttaaaagcgtagacccaaagagtggtaaggaaatctattat
aatctggaaggaccaatcaaccaggcagtatttccaggactgcagggtggcccacataac
cacgccatagcaggaatagcggtagcactgaagcaaacaatgaccccagagttcaaaaga
tatcaaatgcaagtgattgtgaattgtaaagcattggcagctgctttgattgaactggga
tacaaaattgtaactggtggctcagataatcatcttatattggttgacttacgaccaaaa
gggactgatggaggacgagctgaaaaagtacttgaggcctgctctgttgcttgcaataag
aatacctgtccaggtgacaaaagtgctttgcgtcccagtggtttaagattgggaactcct
gcgctgacatccaggggactaatggaagaggattttaaaaaggttgctatgtttattcac
aaaggaattgaactaactctggaaattcagaacagtatgaatcccaaagcaacactaaag
gaatttaaggaaaagttggctggagatgaaaattgtcaaatgaaagtcaatcagataaaa
gaagaagtggaaaaatttgctagaatgttcccaatgcctggcctgacagacatatag
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