Polypterus senegalus (gray bichir): 120542902
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Entry
120542902 CDS
T08668
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psex03016
]
120542902 (trub1)
Enzymes [BR:
psex01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
120542902 (trub1)
Transfer RNA biogenesis [BR:
psex03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120542902 (trub1)
Prokaryotic type
120542902 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
120542902
NCBI-ProteinID:
XP_039631559
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All DBs
Position
1:complement(282947796..282988493)
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AA seq
315 aa
AA seq
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MKTCVITARLLVRVHNCRSMAASTSLQKATKLQSLNGVFAVYKKEGPTSADVLNTLKLKL
LEEAGMEQNLKRKKQILKVGHGGTLDNSASGVLVVGIGKGTKMLSNMLKGSKKYTTVGEF
GKTTDTLDATGKVTEELSYDHIKKDDLIKILKKFSGNIMQVPPLYSALKKDGQRLSVLVK
KGLPVEAKPARPVMVFNLELQNFSLPLFTLDIECGGGFYVRSLVSDIGKELSSCAHVKNL
IRTKQGPFTLEEHALHEDKWTIDAIAESIQAGIPLLTEESSAKKIKLDTTSDIPQSDESN
VDREGTKNIEGKVET
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatgcgtcatcacggcgcgactcttggtccgcgtacacaactgtagaagcatg
gctgcaagcacaagtttgcagaaggctacaaaattgcagtctttgaatggcgtatttgct
gtgtataaaaaggaaggacccacatccgcagacgttctgaatacgctaaaattaaagctt
ttagaagaggcaggcatggagcagaatcttaaaagaaaaaaacagatactgaaagttgga
catggagggacactggataattctgcatctggtgtactagttgttggaattggtaaagga
acaaaaatgctaagcaacatgctaaaaggctcaaagaaatatacaacagttggtgaattt
ggaaaaactacagacacattagacgctacaggcaaagtaacagaagaactctcatatgat
cacattaaaaaggacgacttaataaagattttgaagaagttttctggtaacataatgcaa
gttccacctttatactctgcactaaaaaaagatgggcagagactttctgttttggtgaag
aaaggacttcctgtagaagccaaaccagcaaggcccgttatggtttttaatcttgagttg
caaaatttcagcttgcccctattcacacttgatattgaatgtggtggcggcttttatgta
aggagtttagtcagtgacattggcaaagagctatcttcttgtgcacatgtgaaaaattta
atcagaaccaaacaaggtccttttacacttgaggaacatgcacttcatgaagataagtgg
acaatagatgccattgcagaatccattcaagctggcattccacttttaactgaagaatct
tctgcaaagaaaattaaattagatacaacaagtgatattccacagtctgatgaatctaat
gtagaccgtgaaggcactaaaaatattgaaggaaaagttgaaacttaa
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