Polypterus senegalus (gray bichir): 120542940
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Entry
120542940 CDS
T08668
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120542940 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120542940 (cpsf4)
03019 Messenger RNA biogenesis [BR:
psex03019
]
120542940 (cpsf4)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120542940 (cpsf4)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120542940 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
120542940
NCBI-ProteinID:
XP_039631632
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All DBs
Position
13:141443163..141456955
Genome browser
AA seq
269 aa
AA seq
DB search
MQDIIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLRAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTAEQPP
LPQQAQTQQKQNLPVTTQRSSSLIQLTSANAMSNQQRTPQSIGVMQIHSNSTGSRGPRPL
EQVTCYKCGDKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatataatcgccaccgtggatcacattaaatttgatttggagattgctgtggag
cagcagctgggagcgcaacctttgccgttccctggcatggacaaatcaggagctgctgtc
tgtgaatttttcctgagggcagcatgtataaaaggtggcatgtgcccgttccgccacatc
agtggggagaagactgttgtttgcaagcattggctgcgtggactgtgtaaaaagggagac
cagtgtgaatttcttcatgagtatgacatgaccaaaatgccagagtgctacttttactca
aagtttggggaatgcagcaacaaggaatgcccatttttacacattgatcccgagtccaaa
attaaggactgtccatggtatgatcgaggattctgcaagcatggccctttgtgcaggcac
agacacacccggcgagtcatctgtgtgaactacctggttgggttttgcatagagggtcct
aattgcaaattcatgcacccacgttttgaattgccaatgggcactgcagaacagccacct
ttacctcagcaagcacagacacagcagaagcaaaaccttccagtaacaactcagaggtca
tcttctctgatccagttaacaagtgccaatgctatgtccaaccagcagaggacgccacag
tcgattggagtgatgcagatacacagcaacagcacgggaagcagaggaccaaggcctttg
gagcaggttacctgctacaagtgtggtgacaaaggacactatgcaaacagatgtaccaag
gggcacctggcatttctcagtgggcaataa
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