Polypterus senegalus (gray bichir): 120543001
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Entry
120543001 CDS
T08668
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04010
MAPK signaling pathway
psex04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120543001 (cacna1ba)
04020 Calcium signaling pathway
120543001 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psex04040
]
120543001 (cacna1ba)
Ion channels [BR:
psex04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120543001 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
120543001
NCBI-ProteinID:
XP_039631746
LinkDB
All DBs
Position
13:2840636..2906544
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AA seq
2272 aa
AA seq
DB search
MYKQSIAQRARTMALYNPIPVKQNCFTVNRSLFIFSEDNIIRKYAKRITEWPPFEYMILA
TIIANCIVLALEQHLPARDKTPMSERLDDTEPYFIGIFCFEAGIKITALGFVFHKGSYLR
NGWNVMDFVVVLTGILATVGADFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPL
LQIGLLLFFAIVMFAIIGLEFYMGKFHKTCFKIETGERAVDYPCGVEYPARTCPNGTECR
EFWSGPNFGITNFDNILFAVLTVFQCITMEGWTEILYNANDAAGNTWNWLYFVPLIIIGS
FFMLNLVLGVLSGEFAKERERVEKRREFLKLRRQQQIERELNGYLEWICKAEEVMLAEED
KNAEEKSPLDVLKRAKTKKSKNDLIHAEEGEDHFTDISSVGSPFARASLKSGKNDSSSYF
RRKEKRLRFCIRRMVKAQSFYWIVLCLVALNTLCVAIVHYDQPQWLSDALYFAEFVFLGL
FLSEMALKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVIWAVVKPGASFGISVLRALRLLR
IFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFADETPTT
NFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVQRGMLSSIYFIVLTLFGNYTLLNVF
LAIAVDNLANAQELTKDEEELEEATSQKLAIQKAKEVADVSPLSAANISIAAFVKQTRGA
VSRSSSISSVKSPKEQHKSMKMMSVWEQRTSKIRQQNLRASCEALYSELEPEERLRLSSM
LHIRPDMKTHLDRPLVVEPRDELHNSVDNDAQPADLPPPPDGQQPAPRKHHHHRDKSGDP
LAPDNTNGKHRSHHGRSKEHEGKGERSRSREGGKRHHHQGAPEEGGGDKEHRRHRSHRHV
KEGNGALNNGAAKSEKRTRHNRSGENGERPEKRHKHRGKALSTYEDNCDKDGERRAKERQ
AKPESVTQEGTAPQQLGSLEPVDEKPEDSDNQSNMTGTAGTTNSIAIPVTVTAPPGETTV
IAINSVDFSAPPPTEEKKNLEDMSSKGPRHILPYSSMFVFSPTNPVRRLCHYVVNLRYFE
MCILVVIAMSSIALAAEDPVQADTPRNNVLKYLDYIFTGVFTFEMVIKMIDLGLLLHPGS
YFRDLWNILDFIVVSGALVAFAFSSFIGSHQGVTRGSKGKDINTIKSLRVLRVLRPLKTI
KRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGRFFFCTDESKELEKDC
RGEFLDYEKGNVEAKPREWRKYDFHYDNVLWALLTLFTVSTGEGWPTVLKHSVDATYEDQ
GPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDF
TIGAKPLTRFMPQNKQAFQYKMWKFVVSPPFEYFIMTMIALNTVVLMMKFHGAPEIYESM
LKHLNIVFTALFSLECILKIIAFGALNYLKDAWNVFDFVTVLGSITDIVVTEIITANKLI
NLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFG
NIELNDETAINRHNNFRTFFQALMLLFRSATGEAWHEIMLACLANRMCDRNSGSHGKECG
SEFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWADYDPAA
CGRIHYKDMYNLLRVISPPLGLGKKCPNRVAYKRLVKMNMPIAEDNSVHFTSTLTALIRT
ALEIKLASGVANQQRSDAELRKEISTVWPNLSQKTLDLLVPPHRPNELTVGKVYAALMIF
DYYKQNRSKRVQQQQQQQQQQAPPGGLSQSKVGALFKPMLPLALMQVQDPTLKPVGAVPL
NNGGAIPSPQSPPGAPDSTQGAARRSAKKPVERGRSEETPGSTSAQESVEMKKMEPGTSG
HQQPVLENQGRAASMPRLNTESQKSRPRAPGSSLAPIPDSSPMKRSVSTLTPQRAQEVSL
KDYSLQRAAPDRAHHHHHHHRCHRRKDRERKQHSSEKSPTRQASTDAGTPGDPSSSAVPG
GQMARDRGRERGRSHERKHHSCSSEKQRYYSCDRYSSRDYARPKSNNPSRAASPSDGHEA
HLNRQGSGSVSGSPVMLTSGASTPGRGRRQLPQTPTTPRPNVTYRTANSSPIHFGSSGPP
VGFSPGRLSRGLSEHNALLRGGTDPQNHASVLVNRISSDPYLGQRDDYDSLTEDTLTFED
AVASNAGRHSRTSYLGQGVPNGYHYSLGVNAGPGPGGRGRHYRADADEEDWC
NT seq
6819 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaacagtcgatcgcccaaagagcccggaccatggctctctacaacccgatcccg
gtcaagcagaactgcttcacagtcaacagatcgctcttcatcttcagcgaagacaacatc
atccgcaaatacgccaagagaataacggagtggcctccatttgagtacatgatcctggca
acaatcatcgccaactgcattgtcttggcactggagcagcacctgccagcaagagacaag
acccccatgtcggagagactggatgacacggagccatacttcattgggatcttctgcttt
gaggcgggcatcaagatcacggcgctgggcttcgtcttccacaaaggctcctacctgcgc
aacggctggaacgtcatggacttcgtcgtcgtgctgaccgggattctggccacagttggg
gcagactttgaccttcgaaccctgagagccgtgagagtcctgcggcccctgaagttggtg
tctggaattccaagtctgcaggttgtcctcaaatccatcatgaaagccatggtgcccctg
ctgcagattggccttctgctgttctttgccatcgtcatgtttgccatcattggcctcgag
ttctacatggggaagttccacaagacctgcttcaaaatcgaaacaggggagcgtgccgtc
gactatccgtgtggggtcgagtacccggcacgcacttgtccgaacgggacagaatgcagg
gagttctggagtggacccaactttggcatcaccaactttgacaacatcctctttgcagtg
ctcacagtgttccagtgcatcaccatggaaggctggactgaaattctgtacaacgcgaat
gatgctgctggaaacacatggaactggctctacttcgtgcccctcatcatcatcggctcc
ttcttcatgctcaatttggtcctgggagttctgtcaggagagtttgccaaagagcgagaa
cgcgtggagaagaggcgcgagtttctgaaactccgtcggcagcagcagattgagagggag
ctcaatggctacctggagtggatttgcaaagcagaggaggtgatgctggcagaagaagac
aaaaacgccgaagagaagtcccctttggatgttctgaaaagagcaaagacaaagaagagc
aaaaatgacctgatccatgcggaggaaggagaggaccacttcactgacatctcgtctgtg
ggctcccccttcgctcgtgccagtctgaagagtgggaagaacgacagctcctcatacttt
cggcgcaaggagaagcgactgcgcttctgcattcggcgtatggtcaaggcgcaaagtttc
tactggattgtgctctgcctggtggcgctcaacaccctctgcgtggccatcgttcactac
gaccagccgcagtggctctcggatgccctctatttcgctgagtttgtcttcctgggcctc
ttccttagcgagatggcactgaaaatgtacggcctcggtcctaggaactacttccactcc
tcgtttaactgctttgactttggtgtcatcgtgggcagcattttcgaggtcatctgggcg
gtggtgaagccgggagcctcttttggaatcagcgtcctcagagcactgcgattgctcagg
atatttaaagtgaccaaatactggaattctctgaggaacctggttgtgtcactgctcaat
tccatgaagtccatcatcagcctcctcttcctgctcttcctcttcatcgtggtctttgcc
ctcctggggatgcagctcttcggaggacagttcaactttgcagatgagacgccgacgacc
aactttgacacgttcccagctgccattctgactgtgttccagatcctgactggtgaggac
tggaatgcagtgatgtatcatgggattgaatcccagggtggcgtccagcgaggaatgctc
tcatccatctacttcattgtcctgaccctgtttgggaactatactctcctcaatgtcttc
ttggccatcgctgtggacaacctggcaaatgcgcaggagctgacaaaggatgaagaagaa
cttgaagaggcgaccagtcaaaaacttgccattcaaaaggccaaagaggtggccgatgtg
agccctctgtcggcagcgaacatctccatcgcggcttttgtaaagcaaactcgaggtgct
gtttctcgcagttcgtcaatctccagcgttaaatcaccaaaggagcagcacaagtccatg
aagatgatgtctgtgtgggagcagcggacctccaagatccgacagcagaacctgcgcgcc
agctgtgaggcgctatacagcgagctggagccggaggaacgtctgcgcctctcctccatg
ctgcacatccgacccgacatgaaaacgcatctggaccgccctctggtggtggagccccgc
gacgaactgcacaacagcgtcgacaacgatgctcagccagccgaccttccgcctccgcca
gacggccagcaaccggccccccgcaagcaccaccaccaccgggacaaaagcggagatccg
ctggcacccgacaacaccaatggcaagcaccggtcgcaccacggcaggagcaaagagcac
gagggcaaaggggagcgcagcagaagtcgagaaggagggaagaggcaccaccaccagggg
gcaccggaggaaggcggcggcgacaaggagcatcggcgccaccgctctcaccgccacgtc
aaggagggcaacggcgccctgaataacggggcggccaagagcgagaagcgcaccagacac
aaccgttcgggtgaaaacggagagcggcccgagaagaggcacaagcaccgcggcaaggct
ctgtcaacctacgaggacaactgtgacaaggacggagagcgccgggcaaaagagaggcaa
gccaagccagagagcgtcacccaggagggcacggcaccgcagcagttagggagtctggag
ccagtggacgagaagcctgaggactcggacaaccagagtaacatgacgggcacggcgggc
accaccaatagcattgccattccggtcaccgtcactgctccgccaggggagaccactgtc
attgctattaacagcgtcgacttctcggctccgccgcccacggaagagaagaagaacctg
gaagacatgagcagcaaagggccgcggcacatcctgccctacagctccatgtttgtgttc
agccccaccaacccggttcgaaggctgtgccactacgtcgtcaatctgcgctactttgag
atgtgcatcctggtggtcatcgcgatgagcagcatcgccctggctgcagaagaccctgtg
caggcggacacacccaggaacaacgtccttaagtacctggactacatcttcactggcgtg
ttcacctttgagatggtcatcaagatgatcgatttgggtttgctcctccacccggggtcg
tatttccgtgacctgtggaacattctggacttcatcgtggtcagcggtgctctggtcgcc
tttgccttttcaagcttcattggatcgcaccaaggcgttaccagaggaagcaaaggcaaa
gacatcaacaccatcaagtctctgcgagtcctccgcgtcctgcggcccctcaagaccatc
aagaggctccccaagctgaaggcggtcttcgactgtgtggtgaactcgctcaagaacgtc
ctgaacatcctcattgtctacatgctcttcatgttcatcttcgctgtcatcgcagtccag
ctcttcaagggccgctttttcttctgcacggacgagtccaaggagctggagaaggactgc
aggggtgaatttctggattatgagaaggggaatgtggaggcgaagccccgcgagtggagg
aagtacgattttcactatgacaacgtgctgtgggccctgttgaccctcttcaccgtgtcc
actggagagggctggccaacggtcttgaagcactctgtggacgccacctatgaggatcag
ggaccgagtcccggctatcgcatggagatgtccatcttctatgtggtctactttgtggtc
tttcccttcttctttgtcaatatctttgtggccctcatcatcatcacttttcaagagcaa
ggagacaaagtgatgtcggagtgcagcttggagaagaacgagcgagcctgcatcgacttc
accatcggggccaaacctctgactcgcttcatgcctcagaacaagcaagccttccagtac
aagatgtggaagttcgtggtgtcgcccccgtttgagtacttcatcatgacgatgatcgcg
cttaacaccgtcgtgctgatgatgaagttccacggagctccagaaatctacgagtccatg
ctgaagcacctgaacatcgtcttcacggctctcttctccctggagtgtatcctgaagatc
atcgcgtttggtgccctgaactacctgaaggatgcctggaacgtctttgactttgttacg
gtgctgggaagtatcacggacatcgtggtcaccgaaatcattacagcgaataaactaatc
aacctgagcttcctgagactcttccgggcggctcgcctcattaaacttcttcgtcaaggc
tacacaatccgcattctgctgtggacgtttgtccagtctttcaaggccttgccctacgtc
tgcctgctcattgctatgctcttcttcatatacgccatcattggaatgcaggtctttggc
aacattgagctgaacgacgagacggccattaacaggcacaacaacttccggacgtttttc
caggctctgatgctgctgttcaggagcgccacaggtgaagcgtggcatgagatcatgctg
gcatgtctggccaaccgcatgtgtgaccggaattcgggctcacacggcaaagagtgtggc
agcgagtttgcttatttctacttcgtttccttcatcttcctctgctccttcctgatgctg
aatctctttgtcgctgtcatcatggacaactttgagtacctcacgcgagactcgtcgatc
ctgggacctcaccatctggacgagtttattcgggtgtgggcggactacgaccccgcagcc
tgcggccgcattcattataaggacatgtacaatttgttacgtgtcatctcgccgcccctc
ggcttaggaaagaagtgccctaacagggtcgcctataagcgcctggtaaagatgaacatg
cccatagcggaggacaactctgtgcacttcacgtccactctgacagctctcatccgcacc
gccctggagatcaagctggcatcaggagtagcaaaccagcagcgttcagatgccgaactc
aggaaggagatcagcaccgtctggccaaacctgtctcagaagacgctggacctgcttgtg
ccccctcacagaccgaacgagctgacggtgggcaaggtgtacgctgccctgatgatcttt
gattactacaaacagaaccggagcaagcgggttcagcagcaacagcagcagcagcagcag
caggcgccccccggtgggctctcgcagagcaaggttggcgccctcttcaagccaatgctg
cccttggctctgatgcaagtccaggaccccaccctgaagcccgttggagccgtccccctc
aacaatggcggtgcgattcccagcccacagtctcctccaggtgccccggacagcacacag
ggggcagcacgccgcagcgccaagaagccagtagagcgtgggcgctcggaagaaacgcca
ggtagcaccagtgcccaggagtccgtggagatgaagaagatggagccgggtactagtggg
caccagcagccagtactggagaaccagggccgtgccgcttcgatgccccgcctcaacacg
gagagccagaagagcaggccacgagcgccggggagctccctagcccccattccggactcg
agccccatgaagaggtccgtgtccaccctgactccgcagcgggcacaggaggtcagcctg
aaggactactccctgcagcgggcggcacctgaccgcgcccaccatcaccaccatcaccac
cgctgccaccgccggaaggacagagagaggaagcagcactcgtcagagaagtcgccgacc
cgccaggccagcacggacgcaggtacgccaggtgaccccagttcctcggcagtcccaggt
ggacagatggcacgagacagggggcgcgagaggggccgctcacacgagaggaagcaccac
tcgtgttcatccgagaagcagcggtactactcgtgtgaccgctacagcagtcgggactac
gccaggccaaagtccaacaaccccagccgggcggcgtctccgagtgacgggcacgaggcc
cacctgaacagacagggcagtggttcggttagcgggagtcccgtgatgctgacctccggt
gccagtacgcccgggcgagggcgccgccagttgccgcagacgcccacgacccctcggcca
aacgtgacctacaggacggccaactcgtcgcccatccacttcggctcgtccggaccgccg
gtcggcttctctccgggccggctgagccgaggcctgtcggagcacaacgctctgctacgc
ggcgggacggaccctcagaaccacgccagcgtcctggtgaaccgcatcagctcggacccc
tacctggggcagcgggacgactacgacagcctcaccgaggacactctgaccttcgaggac
gccgtggcctccaacgcgggccgccactcccggacgtcctacctgggccaaggggtcccc
aacggctaccactacagcctgggggtgaacgccgggcccgggcccggcggcagggggcgc
cactaccgcgccgacgcagacgaggaggactggtgctag
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integrated database retrieval system
