Polypterus senegalus (gray bichir): 120543229
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Entry
120543229 CDS
T08668
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
psex01009
]
120543229 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120543229 (hdac6)
04131 Membrane trafficking [BR:
psex04131
]
120543229 (hdac6)
03036 Chromosome and associated proteins [BR:
psex03036
]
120543229 (hdac6)
Enzymes [BR:
psex01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120543229 (hdac6)
Protein phosphatases and associated proteins [BR:
psex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120543229 (hdac6)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120543229 (hdac6)
Membrane trafficking [BR:
psex04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120543229 (hdac6)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120543229 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
120543229
NCBI-ProteinID:
XP_039632110
LinkDB
All DBs
Position
13:72302911..72427396
Genome browser
AA seq
1149 aa
AA seq
DB search
MTSIPSQTSERSLRATSRSPRSPQSESGKKNKKSPQDRKLSLKEVKKKGKMDRSHGEDSV
IMHLGQLDLGNSKPVTGTGLAFTEKFQEYFCLWDDKHSECPERVSTVIDKMKQYELLQRC
HLVKERAATEEEISLVHTVEYVELMKSTQKMSQNELHSLSGNYEHIYIHPKSFQCASLAV
GSVLELVDQVMTGKLRNGFSVCRPPGHHAERDQMSGYCMFNNVAIAASYAKEKYNLKRIL
IVDWDVHHGQGIQHIFEEDPSVLYFSIHRYEYGRIWPHLTESSETAVGQGIGEGYNINVP
WNQTGMKDADYIAVFTQLLLPVAFEFMPQLVLVSAGFDSGIGDPKGKMVVTPPCFAILTH
MLQPLANGKLILALEGGYHYRSTAESACACLKVLLGDQCPKLESSFSPCYGAMDSISKSI
AVHSKFWKCLQILDPHLYKHEGTQPDNPEVFPEEIDSVLDRSSNMIKQALPPVQTGLVYD
ERMMEHYNMWDSHHPEVPQRISRIFSHLEEQGFVERCQRLSVRAATEEELAMCHGNEHIN
TIKSTAMMKPRDLHKQGDEYDSIYICAQSYHSAILAVGACFSAVEALLTGKVSNAVAIVR
PPGHHAEKDSACGFCFFNNVALTARYAQKLAGKSIRVLILDWDIHHGNGTQHIFDDDPSV
LYISLHRYDNGSFFPTMEDANFDKVGHGLGKGYNVNIPWNSSKMGDPEYIAAFQRVVMPI
ASEFDPELVLVSAGFDAARGDPLGGCLVTPECYAHMTHMLLGLAGGQVLVVLEGGYNLSS
ISESMSMCTSVLLGDCLPDLGQLAVPHQSAIRSINNVLQVHRQFWSSLRLNTSQHPCENL
TVPDTAQSSLPTASPTRKELLSPRRTSPKKEITPQKHVQQHENLISEVNEGPLKSLETTV
VTVGNDSINQITEGLQLVSLGSSTIRQKDQIDLEQTVISSLASLSVGGARQKVKPLAQES
TPNVQEHQKMSKGSIQTPQSNQAIQPERPEAVGLEPAHTVTAGEETETSLLDTASGWSKS
QTNCEIYLNSQDIDMGTLFAVEPLTWCPHLRTINPLPSKDLNVFQTCLDCETHVENWVCL
VCYQVHCGRHVNQHMLNHSISSGHVMVLSFTDLSVWCYSCDSYVHNEALDQAKNAAYTMK
FGENMPGCN
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaattcccagtcagacaagtgagagatcactacgtgccacttcccgttctcca
agatcgccacaatctgagagtgggaaaaaaaataagaagtcgccacaggacagaaaatta
agcctgaaagaagtaaaaaagaaagggaaaatggaccgaagccatggtgaggacagtgtc
atcatgcatcttggtcagctggaccttggaaattcaaaaccagtgacaggaacaggattg
gcatttacggaaaagttccaggagtacttttgtctatgggatgacaaacattctgaatgt
ccagaaagggttagcactgtgatagacaaaatgaaacaatatgaacttttacaacgctgt
cacttggtaaaggaaagagctgcaacagaggaggaaatttcacttgtacacactgtggaa
tatgtggaattgatgaaatccactcagaaaatgtcacagaacgagcttcattcattatca
ggaaactatgagcatatatacatccatccaaaatcattccaatgtgctagcttggctgtg
ggatcagttctagaattggttgatcaagtgatgacaggaaaactaagaaatggtttctcg
gtttgcagaccaccaggtcaccatgcagaaagagaccagatgagtggctactgtatgttt
aacaatgtggccattgctgcaagttatgccaaagaaaaatacaatctaaagcgcatatta
attgtagactgggatgtgcatcacggacagggaatacagcatatatttgaagaggatccc
agtgttctttatttctcaatacatcgctatgaatatggacgtatttggcctcaccttaca
gaatcaagtgaaactgctgttggtcaaggaattggagagggctataatataaatgtgcca
tggaatcagactggaatgaaagatgctgattatattgcagtgtttacacaactacttctg
ccagtggcttttgagttcatgccacagcttgtgcttgtttctgctggatttgactctgga
attggagatcctaaagggaagatggttgttactccgccttgttttgctatacttactcac
atgctgcaacctcttgctaatgggaagttgatcttggctttggaggggggatatcattac
aggtcaacagcagaaagtgcatgtgcttgcttaaaggtgctgctgggtgaccagtgccct
aaactggagtcttctttctctccctgttatggtgctatggattcaatttcaaaaagcatc
gcagtacactctaagttttggaaatgtctgcagattcttgatccccatttgtacaagcat
gaaggtactcaaccagataaccctgaggtctttcctgaagagatagactcagtcttagac
cggtcatcaaacatgataaagcaggcactcccacctgtacagactggtctagtatatgat
gagagaatgatggagcattacaatatgtgggacagccatcatcctgaggttccacaacga
atttcaagaatattctctcaccttgaggaacagggctttgttgagcgttgccagcgttta
tcagtgcgtgctgccacagaggaagagcttgcaatgtgccatgggaatgaacatattaac
accatcaagtcaacagccatgatgaaaccccgagatcttcacaagcagggagatgaatat
gactcaatctacatatgtgctcagtcttatcatagtgccattctggctgttggagcctgc
ttcagtgctgtagaggcccttctcactggcaaggttagtaatgcagtggccattgtccga
ccacctggacaccatgctgagaaggacagtgcttgtggcttctgtttcttcaacaatgta
gctctaaccgcacggtatgcacagaaacttgctggaaagtcaataagagtactgattctg
gattgggatatacaccatggcaatggcacccagcacatctttgatgatgaccctagtgtg
ctgtatatttccttgcaccgttatgataatggctcattctttccaacaatggaggatgca
aattttgacaaggttggccatggattgggtaaaggatacaatgtaaacatcccctggaat
tcaagcaaaatgggagatcctgaatatattgcagctttccagagagttgtaatgccaatt
gccagtgagtttgaccctgagctagtacttgtgtcagccggttttgatgcagctcgtggt
gacccacttggtggttgtttagtaacaccagaatgttatgctcacatgacccacatgtta
ctgggtctggcaggaggacaggtgctggtggttcttgaaggaggctataacctatcctca
atatctgagtcaatgtctatgtgcacatctgttctgctgggagactgcctgccagacttg
ggtcagttggcggtaccacaccaaagtgccatacgttcaatcaacaatgttctgcaagta
catcgccagttctggagcagcctccgacttaacacaagtcagcacccttgtgaaaactta
acagttccagatactgcacagtcttcactgccgacagctagtcccaccaggaaggaactt
ctttcacctaggagaacatcaccaaagaaagaaattactcctcaaaaacatgtgcaacaa
catgaaaatcttattagtgaagtaaatgaaggtccattgaagtctttggaaaccactgtg
gttactgtgggcaatgactccattaaccagataacagaaggcctccagttagtatctctt
ggcagtagtacaataaggcaaaaagaccaaattgaccttgaacagacagtcattagtagc
ctagcctccttatctgtgggtggtgcaaggcaaaaggtgaaaccactggctcaagaaagt
acaccaaatgttcaggagcatcaaaaaatgtcaaaaggcagcattcaaactccacagtct
aatcaagctattcagccagaaagacctgaggcagttggcttggaaccggctcacactgtt
acagctggagaagaaactgagactagtcttctagatactgcttcaggatggtcaaaatct
caaacaaactgtgagatttatttgaacagtcaggatattgatatggggacattgtttgca
gtggagcctttaacatggtgtcctcatctcagaacaattaacccactaccttcaaaggat
ttgaatgtgtttcaaacatgtctggattgtgaaactcatgtggaaaactgggtttgtctt
gtgtgctatcaggttcactgtggccgtcatgtgaatcaacatatgttgaatcacagtata
tcttctggccacgtgatggttctaagcttcactgacttgtcagtctggtgttactcatgt
gattcatacgtccacaatgaggccttggatcaagctaagaatgcagcttacacaatgaag
tttggggagaatatgccaggatgcaattaa
DBGET
integrated database retrieval system
