Pseudarthrobacter psychrotolerans: GU243_01645
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Entry
GU243_01645 CDS
T06403
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psey
Pseudarthrobacter psychrotolerans
Pathway
psey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU243_01645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psey03019
]
GU243_01645
Messenger RNA biogenesis [BR:
psey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GU243_01645
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
BRK
Motif
Other DBs
NCBI-ProteinID:
QHK18691
UniProt:
A0A6P1NPH4
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Position
contig_1:335641..337332
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AA seq
563 aa
AA seq
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MTQTALPGLVTPPRLPQGTLRIVPLGGLGEIGRNMAVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIENRVDDIVAVVLTHGHEDHIGAVPYLLRLRADIPLVGSQLTLALIEAKL
QEHRIRPYTMTVEEGQVEKFGPFECEFVAVNHSIPDALAVFIRTAGGTVLHTGDFKMDQL
PLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAEKEIGPTLERLFGQATKRIIVA
SFSSHVHRVQQVLDAAAKHNRKVAFVGRSMVRNMAIAAKLGYLDVPEGLLVDIKNIDNLP
DNRVVLMSTGSQGEPMAALSRMAAGDHRVVVGDGDTVILASSLIPGNENAVFRIINGLLK
LGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPVHGETRHLIANGKIAIESGVPT
ASVILADNGTVIDLKDHRADVVGQVEVGFVYVDGSSVGEVTEADLKDRQTLGDEGFISII
TVINRTTGKVVSGPEIHARGVAEDDSVFDEIIPKINAALEEAVLNRTDHTTHQLQQVVRR
VVGTWVNRKLRRKPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaaccgcccttcccggccttgtcacgcctccacgcctgccgcaaggcaccctt
cggatcgttccgctgggcggactgggggagatcggccgcaacatggccgtgttcgaaatt
gatggcaaactgctcatcgtggactgtggtgtcctcttcccggaggagacgcagcccggc
gttgacctgatcctgcccgatttctcctacatcgagaaccgtgtcgacgacatcgtggcc
gttgtccttacccacggccacgaggaccacatcggcgccgtgccctacctcctgcggctc
cgcgccgacatccccctggtgggctcacagctgacgctggccctcatcgaggccaagctg
caggaacaccggatccgtccctatacgatgaccgttgaagagggccaggtcgaaaagttt
ggccccttcgaatgcgagtttgtcgcggttaaccactccatccccgacgccctggccgtg
ttcatccgcacggccggcggcactgtcctgcacacgggcgacttcaagatggaccagctg
ccactggacggccggatcaccgacctccggcacttcgccaagctgggtgaagagggcgtt
gacctctttatgtccgactccaccaacgcggatgtgccgggcttcaccaccgccgagaag
gaaatcggccccacgctggaacggctgttcggccaggccaccaagcgcatcatcgtggcg
tccttctcctcgcacgtccaccgcgtccagcaggtgctcgacgccgccgccaagcacaac
cgcaaggtggccttcgtgggccgctccatggtccgcaacatggccatcgccgccaagctc
ggctacctggacgttcccgagggcctcctcgtggacatcaagaacatcgataacctgccc
gacaaccgcgtggtgctgatgtccacgggttcccagggcgaaccgatggctgcgctttcc
cgcatggccgccggtgaccaccgcgtggtggtgggcgacggcgacaccgtaattctggcc
tccagcctcatcccgggcaacgagaacgccgtcttccgcatcatcaacggcctgctcaag
ctcggcgcggacgtcatccacaagggcaacgccaaggtgcacgtctccggacacgcggcc
gccggcgagctgctctactgctacaacatccttgagccgctcaacgccatgcccgtgcac
ggcgagacccgccacctgatcgccaacggcaagatcgccatcgagtccggcgtccccacc
gccagcgtcatccttgccgacaacggcactgtcatcgacctcaaggaccaccgcgcagac
gtggtgggccaggttgaagtgggctttgtctacgtggacggatccagcgtcggcgaagtc
acggaagcggacctcaaggaccgccagacgctcggcgatgaaggcttcatctccatcatc
accgtcatcaaccgcaccaccggcaaggtggtctccggacccgagatccacgcccgcggt
gtggccgaggacgattcggtcttcgacgagatcatcccgaagatcaacgccgccctggaa
gaagccgtgctcaaccgcacggaccacaccacccaccagctacagcaggttgtccgccgc
gtcgtcggcacctgggtcaaccgcaagctgcgccgcaagcccatgatcatcccggtggtc
ctcgaggcgtaa
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