Pseudarthrobacter psychrotolerans: GU243_07115
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Entry
GU243_07115 CDS
T06403
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psey
Pseudarthrobacter psychrotolerans
Pathway
psey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU243_07115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psey03021
]
GU243_07115
03019 Messenger RNA biogenesis [BR:
psey03019
]
GU243_07115
Transcription machinery [BR:
psey03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GU243_07115
Messenger RNA biogenesis [BR:
psey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GU243_07115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QHK19547
UniProt:
A0A6P1NL66
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All DBs
Position
contig_1:complement(1505466..1507721)
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AA seq
751 aa
AA seq
DB search
MTETTELSAAVEPSTSAAGSSTAAPAKSSGLAGLKLAQLQALASQLGISGGSRMRKGDLV
TAISAHRAGTSASKAPAKAAEKATENHVAPAAAAPVAAASETSEAPAAEGTRARGRGRSR
RAVSDGVVTAPAAATAAATAAEAPAAAPAEAPASAPVEAGAAAEGERRQPRTRNRRRGEA
AATSTQAEATEAPAEQPAAEQRQADRTETQRADSQAAESGDGQRADRRESGRTRGARDTA
ARETTSRETTARETTSRDTTARETTDGGRDNAGSRDAGQRDGARRDDNRDNTRDNARDGD
DTDGGSRRNRRNRRDRNDRNDRSGGQGGQDSRDNSRNDRFRDRNDRRRGRAQGPDVDDVE
VTEDDVLLPVAGILDVLENYAFIRTSGYLPGPNDVYVSLAQVKKYNLRKGDACVGAIRAP
REGEDRSQQTARQKFNALVRVTSVNGKTPEELKDRVEFAKLVPLYPSERLRLETDPKKIG
PRVIDLVAPIGKGQRGLIVSPPKAGKTLILQSIANAITINNPEVHLMMVLVDERPEEVTD
MQRTVKGEVIASTFDRPADDHTTVAELSIERAKRLVEMGMDVVVLLDSMTRLGRAYNLAA
PASGRILSGGVDSAALYPPKRFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGT
GNMELRLSRQLADKRIFPAVDVNASGTRREENLLSPEEVKIMWKLRRVLSGLETQQSLEL
LTNKIRETGSNVEFLMQVQKTTLGAKSDNDK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaaccactgagctgtccgcagctgtggaaccatcaacttctgctgccggatcg
tcaacggccgcacccgccaagagcagtggcctagccggcctcaagctcgcccagctgcag
gcacttgccagccagctggggatttccggtggatcccgtatgcgtaagggggatctggtg
accgccatttccgcccatcgcgcaggcacgtcagccagcaaggctccggccaaggctgcc
gaaaaggcgaccgaaaaccacgtagccccggccgctgccgcaccggtggctgccgccagc
gaaacttcggaggccccggccgccgaggggacacgtgcccgtggccgtggacgcagccgc
cgcgcagtcagcgacggagtagttacggcaccggccgcagcaacagccgcggcaacagca
gccgaagctccggccgctgcccccgccgaggctccggcgtcggcgcccgttgaggccggc
gcagcagctgaaggcgaacgccgacagccgcgtacccgtaaccgccgccgcggcgaagcg
gccgctacatcaacgcaggcagaagccaccgaggctccggccgagcagcccgccgctgaa
cagcgccaggctgaccgcaccgaaacccagcgcgctgattcccaggctgccgaatcaggt
gacggccagcgtgctgaccgccgggagagcggccgcacccgtggcgcccgcgacaccgca
gcccgtgagaccacgtctcgtgagaccactgcccgcgagaccacatctcgagacaccacc
gcccgcgagaccaccgatggtggccgcgacaacgcaggcagccgtgacgccggccagcgt
gatggtgcccgccgcgatgacaaccgcgacaacacccgcgacaacgctcgcgatggcgac
gacactgacggcggaagccgccggaaccgccgcaaccgcagggaccggaacgaccgcaat
gaccgctccggcggccagggtggccaggacagccgggacaactcccgcaacgaccgtttc
cgcgaccgcaacgaccgccgtcggggccgtgcccagggaccggacgtcgacgacgtcgag
gtcaccgaggacgacgtcctgctgcccgtcgccggcatcctggacgtgctggagaactac
gcgttcatccgcacctccggctacctgccgggcccgaacgacgtttacgtctccctcgcc
caggtcaagaagtacaacctgcgcaagggcgacgcctgcgtcggtgccatccgtgcaccg
cgtgaaggcgaagaccgcagccagcagaccgcccgccagaagttcaacgccctcgtccgc
gtcacctccgtcaacggaaagacgccggaagagctcaaggaccgtgtcgaattcgccaag
ctggttccgctgtacccgtccgagcgcctgcgcctcgagaccgaccccaagaagatcggc
ccccgcgtcatcgacctggttgccccgatcggcaagggccagcgcggtctgatcgtctcc
ccgccgaaggccggcaagacgctcatcctgcagtccatcgccaacgccatcactatcaac
aatcctgaggtccacctcatgatggtgctcgttgacgagcgtcccgaagaagtcacggac
atgcagcggaccgtcaagggtgaggtcattgcctccaccttcgaccgtcccgccgatgac
cacaccaccgtggccgagctctccatcgaacgcgccaagcgcctagtggaaatgggcatg
gatgtggtggtcctgctggactccatgacccgcctgggccgtgcctacaacctggcagca
ccggcttccggccgtatcctgtccggtggcgtcgactccgccgcgctgtacccgccgaag
cgtttcttcggtgcagcccgcaacatcgaaaacggcggctcgctgaccatcctggcaacc
gctctcgtggagaccggttccaagatggacgaggtcatcttcgaagagttcaagggcacc
ggcaacatggagctccgcctgtcccgccagctggcggacaagcgcatcttcccggcagtg
gacgtcaacgcgtccggcacacgccgcgaagagaacctgctttcccccgaggaagtcaaa
atcatgtggaagctgcgccgcgtcctttccggacttgaaacgcagcagagccttgagctg
ctgaccaacaagatccgggagaccgggagcaacgtcgagttcctcatgcaggtccagaag
acaacgcttggtgcgaagtcggataacgacaagtag
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