Pseudarthrobacter psychrotolerans: GU243_07230
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Entry
GU243_07230 CDS
T06403
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psey
Pseudarthrobacter psychrotolerans
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psey03019
]
GU243_07230 (hrpA)
Enzymes [BR:
psey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GU243_07230 (hrpA)
Messenger RNA biogenesis [BR:
psey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GU243_07230 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_23
nSTAND3
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
QHK19563
UniProt:
A0A6P1NKI7
LinkDB
All DBs
Position
contig_1:1533970..1537911
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AA seq
1313 aa
AA seq
DB search
MTFHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGDNGLIG
HTQPRRLAARTVAERIAEELGVEIGQEVGFQVRFTGEVSRATKVKLMTDGILLAEIQRDK
LLRKYNAIIIDEAHERSLNIDFILGYLKRILPQRPDLKIIITSATIDPQRFAKHFGSDEE
PSPIIEVSGRTFPVEIRYRPLSQPAGGADEDASDDELEEDRDPLDAVCDAVDELATEAPG
DILIFFSGEREIRDAAEALNARIQSNRRLAGTEVLPLFARLSLQEQHKVFHPGRNRRIVL
ATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRVSDG
IAIRLYSEEDFESRPLFTDPEILRTNLAAVILQMTAMGVARGPKDVENFPFVEPPDSRAI
NDGVTLLRELGALNAVRPGDAKSGGLTAVGQQLAQLPVDPRLGRMIVEAGKRGCVREVMI
LAAALTIQDPRERPTDKQQLAAEKHARFRDENSDFTGFLNLWNYLQEKQQELSSTQFRRL
CRTEFINYLRVREWQDLFAQLRQMARPLGISLDNKRLADPVGNHEGIHMSLLSGLLSHIG
ILDERKREYAGARGSRFAIFPGSSLFKKSPTFVMAAELVETSRLWARVAAKFDPVWAEQV
APDLVKRSYSEPHWSTKMGAVMAYEKVTLYGVPIIPQRRVNYSRVDPVLAREMFIRHALV
EGDWKTHHKFFHRNRALLLEVEELEARMRRRDLLVDDETLFEFYDIRIGPDVVSERHFDK
WWKEARQQNPDLLDYDKSLLLNNDADDLDEAAYPKTLMHKGFELPLSYEFHPVAPGSPPN
PSDGVTAEVPVLFLNQLDDAAFRWLIPGQRAELVAALIKSLPKQVRKNFVPAPDVARQAV
AALASDFDPAHDELEASLELALRRIRGHVIPPGSWNWDAVPSHLRVSFKVVDTQGKVLDE
GKDLAALQERLAPATRRAIAESLGATPGTTAPQSLGNSKSPGKSGGTVPAASAGGHSAGS
STGFREQAGVTEWAFGTVQRQVSNTVKGHTVTGYPALVDEGTSVALRVFQTSSEQLEAMR
GGVIRLLAFRVPAPDRYVLEHLNNTEKLTFSQNPHGSVSALIADCALAAVDKLTPAELPW
DRASFDALYEQVRAELIDTVFSVTAVVERVLASTRRIEKQLKGTTSLALISALNDVRSQL
EQLVFPGFVARTGYRQLSQLPRYLAAIEKRLEKLPGNVQRDGLGMAAVQRLEDDYDDAVS
ALLPGRRVGAELTQVRWMIEELRVSLFAVELGTAYSVSEKRIRAVLNKALAPA
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcatatctcctaccctgctgagctgcccgtttccgagcgccgcgaggacctg
atggctgccattgcagcgaaccaggtgaccatcatcgccggcgagaccggctccggcaag
accacccagatccctaagatgtgcctcgagctgggcctgggcgacaacggcctgatcggg
cacactcagccgcggcggctcgcagcccgcacggtcgctgagcgcatcgccgaggaactc
ggtgtggagatcggccaggaagtcggtttccaggtccggttcaccggcgaagtcagccgc
gccaccaaggtcaagctcatgaccgacggcatcctgctcgcagagatccagcgggacaag
ctgctgcgtaaatacaacgccatcatcattgacgaagcgcacgagcgcagcctcaacatc
gacttcatcctgggctacctcaagcgcatcctgccgcagcggccggacctgaaaatcatc
atcacctcggccacgatcgatccgcagcgcttcgccaagcacttcgggtccgacgaggaa
ccctcccccatcatcgaggtgtccgggcgcacgttcccggtggagatccggtaccggccg
ctgtcccagccagccggcggggccgatgaggacgcctccgacgacgaactcgaagaggac
cgcgatcccctcgacgccgtctgcgacgccgtggacgagctcgccaccgaggccccgggc
gacatcctgatctttttctccggcgagcgcgagatccgcgacgcggcagaggcactgaac
gccaggatccagtccaaccggcgcctggccggcaccgaggtgctcccgctgttcgcccgc
ctgagcctgcaggaacagcacaaggtattccaccccggccgaaaccgccggattgtgctg
gccaccaacgtggccgaaacgtccctgactgtccccggcatcaagtacgtcatcgatacc
ggcacggcacgcatctcccgttactcgcaccgcaccaaggtccagcggctgcctatcgag
cgtgtatcgcaggcctcggcgaaccagcgctccggccggtgcggccgcgtgtccgacggc
atcgccatccggctctattcggaagaggacttcgagtcccggccgctgttcacggatccg
gaaatcctgcgcaccaacctcgcggcagtcatcctgcagatgaccgccatgggcgttgcc
cgcggtcccaaggacgtggagaacttcccgtttgtcgagccgccggactcgagggcaatc
aacgacggcgtgacgctcctgcgcgagctcggcgccttgaatgccgttaggcccggtgac
gccaagagcggcgggctgaccgccgtcggacagcagcttgcccagctgccggtggatccc
cggctcggccggatgattgtggaggccggcaagcgcggctgcgtccgcgaagtgatgatc
ctggccgcggcactgaccatccaggacccgcgcgagcgccctacggacaagcagcagctc
gccgccgagaagcacgcccgcttccgcgatgaaaactcggacttcaccggcttcctgaac
ctgtggaactacctgcaggagaagcagcaggaactctcgtccacccagttccgccgcctg
tgccggaccgagttcatcaactacctgcgggtccgggaatggcaggaccttttcgcccag
cttcgccagatggcccgcccgctcgggatcagcctggacaacaagcgcctggccgatccc
gtgggcaaccacgagggcattcacatgagcctgctgtccggcctgctgagccacatcggc
atcctggacgagcgcaagcgcgagtacgcgggcgcgcgcggcagccgcttcgcaatcttc
cccggctcgtcgctcttcaagaagtcccccacctttgtgatggctgccgaactcgtggag
acgagccggctctgggccagggtggccgccaagttcgatcccgtctgggcagaacaggtg
gcaccggacctcgtcaaacgcagctacagcgagccgcactggtccacaaaaatgggcgcc
gtcatggcgtatgagaaggtcaccctgtacggcgtgcccatcatcccccagcgccgggtc
aactacagccgggtggatcctgtgctggcccgcgagatgttcatccggcacgccttggtg
gaaggcgactggaaaacgcaccacaagttcttccaccgcaaccgcgcccttctccttgag
gtcgaggagctcgaagccaggatgcgccgccgcgacctgctggtggacgacgaaacgctg
tttgagttctacgacatcagaatcggccccgacgttgtctccgaacggcacttcgacaag
tggtggaaggaggcccggcagcagaatcctgacctcctggactacgacaagtcactgctg
ctcaacaacgacgccgatgacctggacgaagccgcctatccgaaaaccctgatgcacaag
ggcttcgagctgcctctcagctacgagttccacccggtggcgcccgggtcaccgcccaac
ccgtccgacggcgtcacggccgaagtcccggtgctcttcctgaaccagctcgatgatgca
gccttccgctggctgatccccggccagcgcgcggagcttgtggctgccctgatcaagtca
ctccccaagcaggtccgcaagaactttgtccccgctccggatgtggcgcggcaagccgtc
gctgccctggcatcggactttgatccggcccacgatgagctggaggcttccctggaactg
gccctgcgccggatccgcggacacgtcatcccgcccggttcctggaactgggacgctgtg
ccgtcccatctgcgggtgagcttcaaagtggtcgatacccagggcaaggtgctggatgag
ggcaaggacctcgcagccctgcaggagcggctggcaccggcaacacgccgcgccatcgcg
gaatcactgggggcgacgcccgggaccaccgcgccgcagtctctgggaaattcgaagtca
cctggaaagtccggcggaacagtacccgcggcatcggccggcgggcattcggccggcagc
agcacgggcttcagggagcaggccggcgtgacggagtgggcattcggcacagtgcagcgg
caggtcagcaacactgtcaagggccacactgtcaccggctatccggcgctggtggatgaa
ggaacatctgtggcgctgcgtgtcttccagacctcgtcggagcagctcgaggccatgcgc
ggcggtgtgatccggctcctcgctttcagggtaccggcaccggaccgctacgtcctggag
catctcaacaacaccgaaaagctgacgttcagccagaatccgcacggttcagtgtcagcc
ctcattgccgattgcgccctggctgccgtggacaaactgaccccggcggaactcccctgg
gaccgggcgtccttcgacgccctctacgagcaggtccgcgcggaactcatcgatacggtc
ttcagtgtgacggccgtggtggagcgtgtcctggccagcacccggcgcattgagaaacag
ctgaagggcaccaccagcctggccctgatcagcgccctgaacgatgtcaggagccaactt
gagcagctcgtgttcccgggatttgtggcccgcacgggctacaggcagctgagccagctc
ccccgctaccttgccgccatcgagaaacgcctcgaaaagctccccggcaacgtccagcgg
gacggcctgggcatggccgcggtccagcggctcgaagacgattacgacgacgccgtgtcg
gccctgctgcccgggcgccgggtgggtgccgaactgacccaggtccgctggatgatagaa
gagctgcgggtgagcctcttcgccgtcgaactcggaacggcctattccgtctccgaaaag
cggatcagggctgtccttaataaggcgctcgcgccggcctag
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