Pseudarthrobacter psychrotolerans: GU243_20330
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Entry
GU243_20330 CDS
T06403
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
psey
Pseudarthrobacter psychrotolerans
Pathway
psey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GU243_20330
09124 Replication and repair
03420 Nucleotide excision repair
GU243_20330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psey03021
]
GU243_20330
03400 DNA repair and recombination proteins [BR:
psey03400
]
GU243_20330
Enzymes [BR:
psey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GU243_20330
Transcription machinery [BR:
psey03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GU243_20330
DNA repair and recombination proteins [BR:
psey03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GU243_20330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
EXOSC1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHK21646
UniProt:
A0A6P1NML5
LinkDB
All DBs
Position
contig_1:complement(4321420..4323063)
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AA seq
547 aa
AA seq
DB search
MNDGPLIVQSDKTILLEVDHELATEARHAIAPFAELERAPEHMHSYRLTPLGLWNARAAG
LDAEKVLDTLLKYSRFPVPHSLLIDVEETMSRYGRLRLEKDPQHGLVMRTDDYPVLEEVI
RAKKIQPLLGPRIDGETIVVHSSQRGQLKQLLLKIGWPAEDRAGYVDGTPHLIALNEDGW
KLRPYQQLATENFWAGGSGVVVLPCGAGKTLVGAAAMATSSTTTLILVTNTVAARQWKDE
LLKRTSLTEDEIGEYSGSVKEVRPVTIATYQVLTTKRGGLYAHLELLDGHDWGLIIYDEV
HLLPAPIFRMTADLQARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIEAQGYIAP
ADCVEVRIDLPRDERVAYAMAEDADKYRLCATSESKTLIVEQLVARHQGEQLLVIGQYID
QLDEIGERLQAPVIKGDTSVKERQKLFDAFRAGDVHTLVVSKVANFSIDLPEASVAIQVS
GSFGSRQEEAQRLGRLLRPKKDGRAARFYSLVARDTLDQDFAAKRQRFLAEQGYAYRIMD
AKDVGAP
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacggcccgctgatcgtccaaagtgacaaaaccatcctgctcgaggtggaccac
gaactggccaccgaggcgcgccacgcgatcgcccccttcgccgaactggaacgcgccccc
gagcacatgcacagctaccgcctgacgcccctgggcctgtggaacgcacgcgccgccggc
ctggacgcggagaaggtcctggacaccctgctcaaatactcgcggttcccggtgccgcat
tcgctgctgatcgacgtcgaagagaccatgtcccggtacgggcggctgcggctggagaag
gacccgcagcacggcctggtgatgcgcacggacgactacccggtgctggaagaggtcatc
cgggccaaaaagatccagcccctgctggggccgcggatcgacggcgaaaccattgtggtc
cactcctcacagcgcggccagctcaagcagctgctcctcaaaatcggctggccggcggag
gaccgggccggttatgtggacggcacaccccacctgattgccctgaacgaggacggctgg
aagctccgcccctaccagcagctcgccaccgagaatttctgggccggcggcagcggtgtg
gtggtcctgccctgcggcgccgggaaaaccctggtgggtgccgcggccatggccaccagc
tccaccacaaccctcatcctggtgaccaacacggtggccgcccggcagtggaaggacgaa
ctgctgaagcggacgtccctgacggaggacgaaatcggcgagtactcgggatcggtcaag
gaagtccgcccggtcaccatcgccacgtaccaggtcctcaccaccaagcgcggtggcctg
tacgctcacctggagctactggatggccacgactggggcctgatcatctatgacgaagtc
caccttctgccggcgccgatcttccggatgaccgcggacctgcaggcccgccgccggctg
ggcctcaccgccacgctggtccgcgaggacggtcgcgaaggcgaggtcttcagcctgatc
gggcccaaacggtacgacgcgccctggaaggacatcgaagcgcagggctacatcgccccg
gcggactgcgtggaagtgcggattgacctgccccgcgacgaacgcgtggcctatgccatg
gccgaggacgcggacaagtaccggctgtgcgccacgtccgagtccaagaccctgatcgtc
gaacagctggtggcccggcaccagggtgagcagctgctggtgatcgggcaatacattgac
cagctggacgagatcggcgagcgcctgcaggcacccgtcatcaagggcgacacctccgtc
aaggaacggcagaagctctttgatgccttccgcgccggcgacgtgcacaccctggtggtg
tccaaggtggccaacttctccatcgacctgccggaggcgtcggtggccatccaggtctcc
ggttccttcgggtcgcggcaggaggaagcgcagcgcctgggccggctgctgcgccccaag
aaggatggccgggcggcccggttctactcgctggtggcccgggacaccctggaccaggat
ttcgcggccaaacggcagcgcttcctggcagagcaggggtatgcctaccggatcatggat
gccaaggacgtcggcgccccctga
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