Aquirufa nivalisilvae: HME7025_00234
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Entry
HME7025_00234 CDS
T05454
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psez
Aquirufa nivalisilvae
Pathway
psez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HME7025_00234 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psez03019
]
HME7025_00234 (rhlE)
Enzymes [BR:
psez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HME7025_00234 (rhlE)
Messenger RNA biogenesis [BR:
psez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HME7025_00234 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AWL08117
UniProt:
A0A2S2DTG5
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All DBs
Position
277663..278901
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AA seq
412 aa
AA seq
DB search
MTFKELGLADSLLAGIDSMGYKTATPVQSQVIKPILEGRDIIASAQTGTGKTAAFLLPIV
NKIITEPHAENQINALIIVPTRELAIQIADNMEGLGYFTNVSCIAVYGGGDGKSFTTEKT
ALTSGCDIVVCTPGRMIAHLNMGYVNLKEVKYLVLDEADRMLDMGFQDDLIKITSFLSPE
RQNLLFSATMPHKMRELARKLLKNPVEINIAVSKPPEQIVQEAFVVFEEQKSPLIKHLLR
LKDYSRVIIFCSRKQNVKTLTNDLKRAKFKVEEIHSDLEQDVREQVLQDFRNKKTTILVA
TDILSRGIDIDEIELVINYDVPNDGEDYIHRIGRTARAESQGTAYTLISPAEQRKFAGIE
RLLEKEVIKSPIPEEFGAGPAYEPALQKAGDKGRNFSGPKKGGKKFWGKKKK
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
ttgacatttaaagaattaggtctggccgacagccttttagcaggaatcgattccatgggc
tacaagaccgctactcccgtacaatcgcaagtgataaagccaattttggaagggagagat
attattgcttcagctcaaactggtacaggtaaaacggcagcatttttgctacctattgtg
aataaaatcattaccgaaccgcatgctgaaaaccaaatcaatgccttaattatagttcct
actcgtgaattggctatacaaatcgctgataacatggagggtttaggatattttaccaat
gtttcctgtattgccgtatatggcggaggggatgggaaatcttttacgactgaaaaaaca
gccttaaccagcggttgtgatattgttgtttgtacgccaggtagaatgattgctcactta
aatatgggttatgtcaatctcaaagaggtaaagtatttagtgctagatgaagctgacaga
atgctagatatgggcttccaagatgatttaatcaaaatcacctcctttttaagtccagag
cgccaaaacctattattttctgccactatgccacacaaaatgcgggaattggccagaaaa
ctattgaagaatccagtagaaattaatattgccgtttcgaaaccccctgagcaaattgtt
caagaagcctttgttgtctttgaagaacaaaaatctcctctgattaagcatttgttacgc
ttgaaggactatagtcgagtgattattttttgttccagaaaacaaaatgtaaaaacactt
acaaacgacttaaaaagggccaaattcaaggtggaggaaatccattcagatttggaacaa
gatgtaagagagcaagttctacaagattttagaaataaaaagacaacgattttggtggct
actgatattttaagtcggggtattgacatcgacgagatagaattagtgatcaattatgac
gtacccaacgacggggaggattatatccaccgcattggacgtacggctcgtgccgaaagt
caaggtaccgcatatactttaatcagtcctgctgaacaaagaaaatttgctggtattgag
cgattattggaaaaagaagtcatcaaatcccccattccggaagaatttggagctggtccc
gcttatgagccagccttacaaaaggccggcgataaggggcgaaatttttctggtcctaaa
aaaggaggcaagaaattctgggggaaaaagaaaaagtaa
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