Aquirufa nivalisilvae: HME7025_00297
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Entry
HME7025_00297 CDS
T05454
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psez
Aquirufa nivalisilvae
Pathway
psez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HME7025_00297 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psez03021
]
HME7025_00297 (rpoC)
03400 DNA repair and recombination proteins [BR:
psez03400
]
HME7025_00297 (rpoC)
Enzymes [BR:
psez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HME7025_00297 (rpoC)
Transcription machinery [BR:
psez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HME7025_00297 (rpoC)
DNA repair and recombination proteins [BR:
psez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HME7025_00297 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
NQRA_N
Motif
Other DBs
NCBI-ProteinID:
AWL08180
UniProt:
A0A2S2DT26
LinkDB
All DBs
Position
complement(344050..348378)
Genome browser
AA seq
1442 aa
AA seq
DB search
MSFKKTRKLNSDFQKVTISLASPESILEGSNGEVTQPETINYRTYKPEMGGLFCERIFGP
TKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYMLGLSTKKLDQVIYYERYVVVQAGMYAEEGKIGSQYLDFLTEDEYLDILDKLPRENQH
LPDEDPQKFIAKMGADALNMLLSRINLHELSADLRHSADTESSQQRKAEALKRLKVVEAF
RESIGRIDNRPEWMIIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLI
EIKAPEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLL
GKRVDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDR
KDPVVWDILENVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLTCTAFNADFDG
DQMAVHVPLGHEAILEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTETH
KVDGEGRRFYGFEEVVIALNEKKLSKHANIVVKANVRKEDGSLVSEMVETVAGRVLFNLC
VPEQVGYINELLTKKKLQQIISQVHKICGMARTAQFLDDIKDLGFQQAFHGGLSMGIGDV
QIPEEKAHLVKKAQEDVQAVWDNYLMGLITDNERYNAVIDIWTKVNSKITETLMKQMEED
NQGFNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLD
VLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIVNEEDCGTLRGIQVFPLKDN
EEIIEPLSERILGRVSVHDVYDPISNELIVASGDEITEIAANKIDETAIESVEIRSVLTC
ETRNGVCAKCYGRNLSTGHMVGQGEAVGVIASQSIGEPGTQLTLRTFHVGGTAQNVSLDA
SVKAKFDGVINFEEVRTVSSTDSEGNPVEIVMGRSGEVQIINPANKQLLISSNIPYGSVI
RVKDGQTIKKGEEICAWDPYNAVILSEAEGKVAFESIEENNTYKEEADEQTGLREKVIIE
SKDKTKNPSVLVVAKGKEDLVYNVPVGARLAIDEGDKIKAGQIIAKIPRAAGKTRDITGG
LPRVTELFEARNPSNPAVVSEIDGVISYGIIKRGNREIIVTPKEGTERKYLVPLTKFILV
QNNDFVRAGTPLSDGAITPSDILSIKGPTAVQEYLVNEIQDVYRLQGVKINDKHIECIVR
QMMQKVEILDPGDTQFLQGQNVDRFAFREENDQIMDKKVITESGDSDKYKPGMIISARAL
RDENSSLKRRDMKVMKVRDAHAAVSSANLQGITQASLGTESFISAASFQETTKVLSEASI
RAKQDTLEGLKENVIVGHLIPAGTGVRRYKDFIVTPVDELKQLEAKVAASEAEVAAKVSV
EN
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaaaagactagaaagctgaatagcgacttccaaaaggtgaccatttcattg
gcctctcctgagtcgatcttagaaggttcaaatggtgaagtaacccaaccggaaaccatc
aactatagaacatacaagcctgagatgggtggattgttctgtgagagaatctttggacct
accaaagattgggaatgtcactgtggaaaatataagcgtattcgttacaaaggcatcatt
tgcgaccgctgtggtgttgaagtaactgagaaaaaagtacgtcgtgagcgtatgggacac
atcgaattggtggttccagttgcgcatatttggtacttccgtagcttacccaacaagatt
ggttacatgcttggattatcaactaagaaattagatcaagtgatctactatgaaagatat
gtggtggttcaagccggtatgtatgctgaagaaggaaagataggttctcaataccttgat
ttcttgactgaagatgagtacttggatatcttggataagttaccacgtgagaaccaacat
ttgccggatgaagatccacagaaattcatcgctaagatgggtgctgacgcattgaacatg
ttgttgtctcgtatcaacttacacgaattatcggctgacttacgtcactcggcagatact
gaatcttcacaacaacgtaaagcagaagctttaaagcgtttgaaggtagtagaagcattc
cgtgagtcgattggccgtattgataaccgtccagagtggatgatcatcaaaatggtacca
gtgattccaccagaattacgtccattagttccattagatggaggtcgttttgcgacttct
gacttgaacgatttataccgtcgcgtaatcatccgtaacaatcgtttgaagcgtttgatc
gaaatcaaagctccagaggtaattttacgtaatgaaaagcgtatgttacaagaggctgtt
gactccttgttcgacaactctcgtaaggtaaatgccgttcgttctgaaggtaaccgtgct
ttgaaatctctttctgatatgttgaaaggaaagcaaggtcgtttccgtcaaaacttatta
ggaaagcgtgttgactactcaggtcgttcggtaattgtggttggaccagaattgaaaatg
catgagtgcggtcttccaaaagacatggctgctgaacttttcaaaccgtttgttatccgt
aagttgatcgagcgtggtatcgttaaaacggttaaatctgccaagaaaattgtggatcgt
aaagatcctgttgtttgggatattttggaaaatgtcatgaaagggcacccggtattatta
aaccgtgctcctacgttgcaccgtttgggtatccaagcgttccagcctaaactaattgaa
ggaaaagcgattcaattacacccattgacttgtacggcattcaacgccgactttgacggt
gaccagatggcggttcacgttccactaggacatgaagcgattttggaagcctctttgttg
atgttggcctcacataacatccttaaccctgctaatggagcgccgatcacggtaccttca
caagacatggttcttggattatattatgtaaccaaaggaagaaaatcaactgaaacacat
aaagtagatggcgaaggccgtcgtttctatggttttgaagaagtggtgattgcattgaac
gaaaagaaattatcgaaacatgcgaacatcgtggtaaaagcgaatgtacgtaaggaagat
ggttctttagtgagcgaaatggtggaaactgttgcaggtcgcgtattgttcaatctttgc
gtaccagagcaagttggttacatcaatgaattattgactaaaaagaaattgcagcagatc
atttctcaagttcacaaaatttgtggaatggctcgtacagctcaattcttggatgatatc
aaagatttaggattccaacaagccttccacggcggattgtcgatgggtattggtgatgtt
cagattccagaggaaaaagcacacttagtgaagaaagctcaggaagatgtacaagctgtt
tgggataactacttaatgggtttaatcacagataacgagcgttacaatgcagttattgac
atctggacaaaagtgaactcgaaaattaccgagacattgatgaagcagatggaagaggat
aaccaaggattcaatgcgatctacatgatgatgcactctggagcccgtggttctcgtgag
caaatccgtcagttgggtggtatgcgtggtttgatggctaagccgcagaagaacttacaa
ggttcggttggtgagatcatcgaaaaccctatcctatctaactttaaagaaggtctagac
gtattagagtactttatctcaacacacggtgctcgtaaaggtttggcagatactgccttg
aaaacagccgatgcgggttatttgacacgtcgtttacatgacgttgctcaagatgtgatt
gtgaatgaagaagattgcggtactttacgtggtattcaggtattcccattgaaagataat
gaggagatcattgagccattatcggagcgtatcttaggtcgtgtatccgtacatgatgta
tatgatccaattagcaatgagttaattgtagcttctggcgatgaaatcacagagattgca
gcaaacaaaattgatgagactgctattgaatctgttgagattcgttcggtattaacttgt
gaaactagaaatggtgtttgtgcgaaatgttacggacgtaacttatctacaggccacatg
gtgggtcaaggagaagctgtaggtgtaattgcatcacagtcgatcggtgagccaggtaca
cagttaacgttacgtacattccacgtcggtggtacggcacaaaacgtatcattggatgcg
agtgtaaaagcgaagtttgatggtgtgattaattttgaagaggttcgtacagtaagttca
actgattcagaaggaaatccagtagagatcgtaatgggtcgttcgggtgaagttcagatc
atcaatcctgctaacaagcagttgttgatttctagcaacattccatacggttcagttatt
cgtgtgaaagatggtcaaaccatcaagaaaggcgaagagatttgtgcttgggatccatac
aatgcggttattttatctgaagcagaaggtaaggttgcgtttgaatcgattgaggaaaac
aatacctacaaagaggaagctgatgagcaaacaggtttacgtgagaaggtgattatcgaa
tctaaggataagactaagaacccatccgtattggttgtagctaaaggaaaagaggatttg
gtatataacgtaccagtaggtgctcgtttggcgattgatgaaggagacaaaatcaaagct
ggacagatcattgcgaagattccacgtgcggcgggtaaaactcgtgacattacgggaggt
cttccacgtgtaacagagttatttgaagcacgtaatccatctaacccagcggtagtttct
gagattgatggtgttatttcatatggtatcatcaagcgtggtaaccgtgagattatcgta
actccaaaagaaggaacagagcgtaagtacttggtgccattgactaagtttatcttggta
caaaacaatgacttcgtacgtgctggaacgccattatctgatggagcaattacgccttcg
gatatcttatcgatcaaaggaccaacagcggtacaagaatacttagtgaatgaaatccaa
gatgtataccgcttacaaggggtaaaaatcaacgataagcatattgagtgtatcgttcgt
cagatgatgcagaaagttgaaatcttggatccaggtgatactcaattcttacagggtcaa
aacgtagatcgttttgccttccgtgaggagaatgatcagattatggacaagaaagtaatc
acagaatcaggtgattcagataagtacaagccaggtatgattatctctgctcgtgcttta
cgtgatgagaactcctcattgaagcgtagagatatgaaagtgatgaaagtacgtgatgcg
catgcggcagtctcttctgctaatttgcagggtataactcaagcatcattgggtactgag
tcattcatctcagcggcatccttccaggaaacgacgaaggtattgtctgaggcatcgatt
cgtgcaaaacaagatacattggaaggcttgaaggagaacgtaattgttggacacttgatt
cctgcgggaacgggagttcgcagatacaaggacttcattgttactccagtagatgagtta
aagcaattagaagcaaaagtggcagctagcgaagcagaagttgcggcgaaggtttcggtt
gaaaactag
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integrated database retrieval system
