Aquirufa nivalisilvae: HME7025_01273
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Entry
HME7025_01273 CDS
T05454
Symbol
rrp3
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psez
Aquirufa nivalisilvae
Pathway
psez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HME7025_01273 (rrp3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psez03019
]
HME7025_01273 (rrp3)
03009 Ribosome biogenesis [BR:
psez03009
]
HME7025_01273 (rrp3)
Enzymes [BR:
psez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HME7025_01273 (rrp3)
Messenger RNA biogenesis [BR:
psez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HME7025_01273 (rrp3)
Ribosome biogenesis [BR:
psez03009
]
Prokaryotic type
rRNA helicases
HME7025_01273 (rrp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
Hyccin
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AWL09135
UniProt:
A0A2S2DUT4
LinkDB
All DBs
Position
1440270..1442099
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AA seq
609 aa
AA seq
DB search
MCSGNVIKKQQMSNQIRFDSLPFSEGILAAVNEMGFEFASPIQSEAIPFILEGRDVIGQA
QTGTGKTAAFGIPMIEHVAPFEKYVQAIVLCPTRELALQVTEELKKLSKFTKGVWVTTVY
GGDSIERQIKSLKAGANIVVGTPGRVIDLIERRALKLGQASMIVLDEADEMLDMGFREDI
ESILQEIPEERQVVLFSATMSKPIMALTNRYLTNPKLVKVVKNEITNVNIEQLYFDVKGR
AKMEVTTRLIDFYNLKLVLIFCNQKKRVDEVVEELVMRGYAAEGLHGDLRQSQRTQVMNR
FRNGNVGFLVATDVAARGLDVENVDAVINYDIPLDEEYYVHRIGRTGRAGKFGKAFTLVV
GSERNRLREIMNYTKVKIEKGVIPTFTDVVGVKKGMFIERVAATIQEGDLDVFNDALTNL
HHAGFTTEQIVAALVKISMGVQKNEFGDENLEGEFERQSRKYGRDDRGGDRGDRGGYRGD
RGGDRDGRRGAGRFERDSRYGGRDDRGGDRDRGPRGPRNDKEGKPYRSDENMVRMFVNIG
FNEKISPSNIVGAFAGESGIPGNVLGQIQIENKHTYVDVPKEYANVVLEKMAGAQIKGKR
VLVEIAKPV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcgggcaacgtaattaaaaaacaacaaatgagtaatcaaattcgctttgattcg
cttccgttttcggaaggaatcctagctgctgttaatgaaatgggctttgaattcgcttct
cccattcaatcagaagctattccatttattttagaaggtcgtgacgtaatcggccaagca
caaacgggtacaggtaaaactgccgcgtttggtattcctatgattgagcatgtcgctcca
ttcgaaaaatatgttcaggccatcgtgttatgtcctactcgtgaattagctcttcaagta
acggaagaattaaagaaattatccaaattcactaaaggtgtttgggtaacaactgtttat
ggtggagactccattgagcgtcaaatcaagtccttaaaggctggtgctaacatcgtagtt
ggtactcctggccgtgtgattgacttaattgaacgtcgtgcattgaaattaggtcaggca
tccatgattgtattggatgaggccgatgaaatgttagatatgggttttagagaagatatt
gaaagtatcttacaagaaatccctgaggaacgtcaggtggtattattttccgctacgatg
tctaagcctatcatggctttaactaaccgttatttaaccaaccctaaattagttaaggtg
gttaaaaatgaaattaccaatgtcaatattgagcaattgtactttgatgtcaaaggacgt
gcgaaaatggaggtaacaactcgtttaatcgatttttataaccttaaattggtgttgatt
ttctgtaatcagaagaaaagagttgatgaggtagtagaggaattggttatgcgtggatac
gctgctgaaggtttacacggtgatttacgtcaatctcaacgtacgcaagtaatgaatcgt
ttccgtaatggaaatgtaggtttcttggttgcaactgacgtggctgcacgtggtttggac
gttgaaaatgtagatgcagttatcaattatgatatcccattggatgaagaatattatgta
caccgtatcggtcgtactggtagagctggaaaatttggtaaagctttcactttagtagtt
ggttcagaaagaaatcgtttgcgcgaaatcatgaattacacgaaggtaaagattgaaaaa
ggagttataccaacctttacagatgtagtaggtgttaagaaaggcatgttcattgaacgt
gtagctgctactattcaagaaggtgatttagatgtattcaatgatgcattgacgaacctt
catcatgctggatttactacagagcaaatcgttgctgctttagtgaaaattagcatgggt
gttcaaaagaatgagtttggtgatgaaaaccttgaaggagaatttgaacgtcaatctcgt
aaatacggtcgtgatgaccgtggtggagatcgcggagatcgcggtggataccgtggtgat
cgtggcggtgaccgtgatggtcgtcgtggcgctggtcgctttgagagagattctcgttac
ggtggacgtgatgaccgcggtggcgacagagatcgtgggccacgtggaccaagaaatgac
aaagaaggcaaaccttaccgttccgatgaaaacatggttcgtatgtttgttaacattggt
ttcaatgagaaaatttctccttctaacattgtaggtgcttttgcaggtgagtcaggaatt
cctggtaatgtgttagggcaaattcaaattgaaaataagcatacttatgtagatgtgcct
aaagaatatgcgaatgtcgttttagaaaaaatggcaggagctcaaattaaaggaaaacgt
gttttagttgaaattgctaaacccgtataa
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