Pseudovibrio sp. FO-BEG1: PSE_0052
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Entry
PSE_0052 CDS
T01669
Name
(GenBank) DNA helicase, ATP-dependent, RecQ type, bacterial
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSE_0052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psf03019
]
PSE_0052
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_0052
Enzymes [BR:
psf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSE_0052
Messenger RNA biogenesis [BR:
psf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSE_0052
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSE_0052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
IF2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEV34564
UniProt:
G8PGJ5
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All DBs
Position
complement(53649..55487)
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AA seq
612 aa
AA seq
DB search
MLLLMTPTQDIVASPNDVLKKVFGYDAFRGNQQVVIDSVMAGESCCVLMPTGAGKSLCYQ
VPALCRRGVGIVVSPLIALMQDQIATLRELGVRATSINSALSYDEVQAAYRDLRAGELDL
LYVAPERLVRPEFVGLLEELNQRGLIALLAIDEAHCISQWGHDFRPEYRELTNVRAKLEG
VPCLAVTATADEPTRKDIQERLNLPRLISSGFDRPNITYTVGIKHNPKQQLRRFLKERPA
GESGIIYCLSRKKVEETAAWLVEEGFDALPYHAGFDNSVREANQDRFIKEEGLIMVATVA
FGMGIDKPNVRFVAHLDLPKNIEAYYQETGRAGRDGLPSEAWMIYGMQDVVLLNQMIDRS
EAPENQKQIERQKLRSFLAYCETATCRRSVLLRYFGDECEPCGNCDTCLNPPKTMDGTIA
AQKLLSCILRTGQSFGANYVIDVLLGNANERIISRGHDQLSTFDIGGEFTKIQWNAITRQ
LLAAGLIFADHDAHGALKMTAMGMAFLKERQTIELKVDQLANSAKMERRAKAPAKAQIED
IADQELFEKLRARRMELARERNVPPYVIFNDKTLIEMAVERPQRLEEMLEISGVGESKLE
RFGPAFLEIIRD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
gtgctgctgctcatgacacccacgcaagatattgttgcctcgcctaatgatgttctgaaa
aaagtattcggctacgacgcgtttcgcggcaatcagcaggttgtgattgatagcgtcatg
gctggcgagagctgctgcgttttgatgccaacaggggcggggaagtctctgtgttatcag
gtgcctgccttgtgtcgtcgtggggtgggcattgttgtttcgccgctgattgcgctgatg
caggaccagatcgcgacactgcgcgagcttggcgtgcgggcgacatccatcaattccgct
ctttcctatgatgaagttcaagctgcctatcgtgatttgcgggctggggagttggatctg
ctttatgtggcgccagagcggctggtgcggcctgagtttgttggtttgctggaagagctg
aaccaacggggcttgattgcgctgctggccattgatgaggcgcattgcatcagccagtgg
ggccatgacttccgccctgagtaccgtgagctgaccaatgtgcgggcgaaactcgaaggt
gtgccttgtctggcggtgactgcgacggcggatgagccgacgcggaaggacattcaagaa
cggctcaatctaccgcgtctgatttcctcaggatttgaccgtcctaacatcacctacacc
gtgggcatcaagcataacccgaagcagcagttgcgccggttcctgaaggaacgaccagct
ggtgagagcggcatcatctactgcctgtcgcgcaagaaggtggaggagacggctgcctgg
ctggtggaagaagggtttgatgctctgccttatcatgcagggttcgataactcagtgcgt
gaggccaatcaggatcgcttcatcaaggaagaaggcctgatcatggtggcaaccgtcgcg
tttggtatgggcattgataagcccaatgtgcggtttgtggcgcatctggatttgccgaag
aacattgaggcttactatcaggaaacaggccgcgctgggcgtgatggtctgccgtctgaa
gcctggatgatttatggcatgcaggatgtggttctgctgaaccagatgattgaccgcagc
gaggcgcctgagaaccagaaacagattgagcggcaaaagctgcgctcgtttttggcttac
tgtgaaacggcgacctgtcgacgttctgttttgctacgttactttggggatgagtgcgag
ccttgtggcaactgtgacacctgcctgaacccgccgaagactatggatgggaccatcgcc
gcgcagaagctgctctcctgcattttgcgcaccgggcagagttttggggcgaactatgtg
attgatgttttgctgggtaatgccaatgagcggatcatctcccgtgggcatgaccagttg
tcgaccttcgatatcggcggtgagttcaccaagatccaatggaatgcgattacccgtcag
ctgttggctgcaggccttatctttgcggaccatgatgcccatggggcgttgaagatgaca
gcgatgggcatggcgtttttgaaagagcgccagaccattgagctgaaagtggaccagctt
gccaactcagccaagatggagcggcgggcgaaagcaccggcaaaggctcagattgaagac
attgcggatcaggagctgtttgagaaacttcgtgcgcggcgaatggagctggcgcgagaa
cggaacgtaccgccttatgtgatcttcaacgataagaccctgattgaaatggcagtagaa
cgcccacagcggttggaagagatgctggaaatctccggtgtcggcgagtccaaactggaa
cgcttcggcccggcctttctggagatcattcgggattaa
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