Pseudovibrio sp. FO-BEG1: PSE_0390
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Entry
PSE_0390 CDS
T01669
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSE_0390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psf03019
]
PSE_0390
Enzymes [BR:
psf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSE_0390
Messenger RNA biogenesis [BR:
psf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSE_0390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEV34902
UniProt:
G8PK82
LinkDB
All DBs
Position
complement(393112..394473)
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AA seq
453 aa
AA seq
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MTDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPL
LQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFR
ALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKK
RQTLFFSATMPREIRDLSERFLTNPVEVTTAPPATTVETVTQQIAHLEKDAKFPLLKELL
EKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLV
ATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAI
QKLIGKKIAEMDGFTFFPSDREPKSARSNAQVAGKRAKGSGPRKGPGSGKFAQKPKGKPA
GKKSPPRRSPSKSSDNASAPAGDTGGYLKRKKS
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgattttgacaaacttggtgttgcaaaaccatttcagatcgccctgaaatctaaa
ggctatagcgagccaacacctattcaggaaaacgcaattccctacattctggatggtaag
gacctgcttggccttgctcagaccggaacgggtaaaaccgccgctttcgcagtgccgctt
cttcagcgcttgcttgagagccggtatcgcgcggcgccgaagagcgtgcgcagccttatt
ctgacgcctacccgcgagctggcggaccagattacaaagaacatcaaggcctatgcgggc
cgcaccaagatgtacaccagctgtgttgtgggcggtgtgccgtttcctccgcagttccgc
gcgttgcagcgtggtctggatgtgctggtggcaacgccgggccgtttgctggacctgcac
cgcaagaacggtgtcagctttgatgagttggaaatcttcgttctggatgaagcagaccag
atgctggatttgggctttatcgcagagctggaagagatcgcttatctgctgccaaagaag
cgtcagaccctgttcttctccgcgaccatgccgcgtgagatccgcgatctgtcagaacgc
tttttgaccaacccggttgaggtgaccaccgctccaccagcgaccacggttgagactgtg
acacagcagattgcgcatctggagaaagatgccaagttcccgctgctgaaagagcttctg
gagaaggacgagtgcgagcgcgcactggtgtttactctgaccaagaagggcagtgcccgc
cttgcggcccgcctgaatgcagatggagtgcctgctgaggcgatccatggcgacatgtct
caggcagaacgccagaagacgctggacaagttcaagcgaggtaagctgaagacccttgtg
gcgaccgatgttgcagctcgcgggattgatgtttccgacatttcccacgtgatcaacttc
gacatgccgaacgcgacggagaactacgttcaccgtattggccgtacagcgcgtgcgggc
aagagcggaacggcaatcaccttctgcttaccggaagatcgcggcatgctgcgtgccatt
cagaagctgattggcaagaagatcgcggagatggatggtttcaccttcttcccgtctgac
cgtgagccgaaaagcgcgcgcagcaatgcgcaggtggctggtaagcgtgcgaagggcagt
ggtccacgtaaagggccgggcagtggcaagtttgcgcagaagccgaaaggcaaacctgct
ggcaaaaagtctcctcctcgtcgttcaccgagcaagtcttccgacaacgcatctgctccg
gctggtgacaccggtggttacctgaagcgtaagaagtcctaa
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