Pseudovibrio sp. FO-BEG1: PSE_1347
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Entry
PSE_1347 CDS
T01669
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSE_1347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psf03019
]
PSE_1347
Enzymes [BR:
psf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSE_1347
Messenger RNA biogenesis [BR:
psf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSE_1347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_25
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEV35859
LinkDB
All DBs
Position
1421957..1423408
Genome browser
AA seq
483 aa
AA seq
DB search
MKNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPL
LTRLAEDRKKAAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQLR
ALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKLPKV
RQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALLDIL
SEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKILV
ATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRDI
ERLIGRKIPSGDSDWDGASGDMSTFDPTAEPQRLKRHKRPQNNRRRNGGGGGANRSAGGA
GRSAQGKTGENGARPAGAKPNAGRGRGKPNANARPGQKNGQNRNQNRTQSGRPRRAKPAA
AQR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaattttgacgaagctggcctcgcagaacctatcctgcgcgccgtaaaagaagag
ggctacgaggctccaaccccaatccagcgcgaagtgatcccgctgatgaaagagggcgag
gacatcctcggcatcgcacaaacaggcaccggcaaaaccgcggcctttgtgctgccactg
ctcacccgtctggcagaagaccgcaagaaagcagcgccgcacacctgccgcgcgctcatt
ctggcaccaacccgtgagctggcctcccagatcgccgaaagcgtgcgcacctacggccag
ttcatcggcccgtctgttgctgtgatttttggtggtgtgaagcccggcccacagctgcgc
gccctgtccaaaggtctggacattgtgatcgcgaccccgggccgtctggaagatcacatg
agcaccggcggcattaagctggacgccacaacaacggttgtactggacgaagccgaccag
atgctggaccttggttttgccccagccatccgccgtattcttggcaaactgccaaaagtg
cgccagacagtgctgctctccgccaccatgccaatccagatccgcaatctggccaaagaa
ttcctgagcaacccgcatgagatttcggtcgcgccggtgtcccgtccgattgaaaagatc
gaccagtccgtgcgcttcctcaactccagctcaaaacgcgccgctctgctggacatcctc
tccgaagatgacatcgaacgcgccatcgtcttcacccgcaccaaacgcggagcagaccgt
gtcagcggccatctggaaaaagcaggcctcagctcagctgcgatccacggcaacaagagc
cagcgcaaccgcgaaaagtcgctggatggcttcaaaaatggccgcatcaaaatcctcgtg
gcaacggatatcgcggcccgcggcattgatattgatggcgtcagccacgtggtcaactac
gagctgccaaacgtgccggaagcgtatgtgcaccgtattggccgcaccgcccgcgcaggc
aaaagcggcgttgccgtctccctgtgtgatgcaaccgaacagccatacctgcgcgatatc
gaacgcctgatcggtcgcaaaatcccatctggcgacagtgattgggatggcgcatccggt
gacatgtcaacatttgacccaaccgcagagccacaacgcctcaagcgccacaaacgcccg
caaaacaatcgtcgtcgcaatggcggtggcggcggcgcaaaccgctcagccggtggcgca
ggtcgttctgctcaaggcaaaactggcgagaatggtgcaagaccagcaggcgcaaagcca
aatgcaggtcgtggtcgcggcaagccaaacgcaaacgcccgtccgggccagaaaaacggc
cagaaccgcaaccaaaaccgcacccagagcggcagaccacgccgcgcaaaaccagcagcg
gcgcagcgctaa
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