Pseudovibrio sp. FO-BEG1: PSE_3105
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Entry
PSE_3105 CDS
T01669
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03030
DNA replication
psf03430
Mismatch repair
psf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSE_3105
03430 Mismatch repair
PSE_3105
03440 Homologous recombination
PSE_3105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psf03032
]
PSE_3105
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_3105
Enzymes [BR:
psf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSE_3105
DNA replication proteins [BR:
psf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSE_3105
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSE_3105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
DEDDh_C
RNase_H_2
DUF3413
PAS
Motif
Other DBs
NCBI-ProteinID:
AEV37613
LinkDB
All DBs
Position
3327898..3329313
Genome browser
AA seq
471 aa
AA seq
DB search
MLVGLSLRLRIFLLFAGVAAASCAVVGAALYFGYTRIPETNAASGFILAGLLSSFGLLAI
SVSIWLLFDENVAKPVQQLSAAIRTRTHADVEASIDLQSAKYLGDLAPAAQAVTGRLTDE
AAGVGDLVADATAQLAAEREQLALLLTEIPVAIVLVSPAHKIMLYDGQAADILGQVHVPR
LSASIFDYFAEDEILGAYEQLKELRTEIAVKAKGARGNLNFQLRLKKLSQASGYMILIDD
ATARLAPEAPRPLIYDFDATQHFETEKAIEQQPLKDLSFVVFDTETTGLMPNKDEIVQIG
AVRVVNGRIIPGETVNQLVNPGRPIPAASTGVHRITDDMVADAPDPVTATSDFHVFAKDA
VIVAHNAPFDMAFLQRYGHMSGHVWDHPILDTVLLSAVVFGAEQEHTLDALCSRLDIELP
EALRHTALGDAQATAEALCKLLPILTSRGFDTFGKVVEQTRKHGRLLKDMN
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgttggtagggctcagtctacgacttcggatttttcttctgtttgcaggtgttgccgca
gccagttgtgccgtcgtcggggctgcgctctatttcggatacacccgtatccctgaaacc
aatgctgcctccgggtttattctcgccgggttgctttccagttttggactgcttgccatc
tctgtcagcatctggctgctatttgatgaaaacgtcgctaaaccagtgcaacagctttcc
gcagcgatccgcacaagaacgcacgcagatgtggaagcatcaattgacttacaaagtgca
aagtatttgggcgaccttgcaccggctgcacaggctgtaacagggcgattgactgacgaa
gccgccggtgtgggtgatctggtcgccgatgcaacagcgcagttagctgccgaacgcgaa
cagcttgccttgcttcttactgaaattcccgttgccatcgttcttgtcagcccagctcac
aagatcatgctttatgatggacaagcagcagatatccttgggcaggtccacgttccacgt
ctgagtgcatctatctttgattactttgctgaagacgagattcttggtgcttatgagcag
ctcaaggaactgcgcaccgaaattgcggtgaaggccaaaggggcaagaggtaatctcaac
ttccaactgcgccttaaaaagctcagtcaggcatcgggctacatgatcctgatcgacgat
gccaccgcacgcctcgcacccgaagctccacggccattgatctatgattttgacgccact
caacattttgagaccgaaaaggcgatcgagcagcaacctctgaaagatctgagctttgtt
gtgtttgatactgaaaccacgggtctgatgccgaacaaagatgaaatcgttcaaatcggt
gctgtacgggttgttaatggacggataattcccggtgaaacagtaaatcaactggtgaac
ccgggccgcccgatcccagccgcctccacgggagtgcaccgtatcaccgacgatatggtg
gcagatgccccggatcctgtgacagcgacttcagattttcacgtgttcgccaaagatgct
gttatcgttgcccacaacgccccattcgatatggctttcttgcaacgctatggccatatg
tctggtcatgtatgggatcatccaatcctcgatactgttctgctctcagcagtcgtcttt
ggagcagagcaggaacacaccctcgacgctctctgttctcgacttgatatcgaactccct
gaagccctccgccacaccgccctaggcgacgcccaagccaccgccgaggccctctgcaaa
ctcctccccatcctgacatcccgtgggttcgatacctttgggaaagttgttgaacagaca
aggaaacatgggcggttgctgaaggatatgaattaa
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