Pseudovibrio sp. FO-BEG1: PSE_3413
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Entry
PSE_3413 CDS
T01669
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03030
DNA replication
psf03430
Mismatch repair
psf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSE_3413
03430 Mismatch repair
PSE_3413
03440 Homologous recombination
PSE_3413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psf03032
]
PSE_3413
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_3413
Enzymes [BR:
psf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSE_3413
DNA replication proteins [BR:
psf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSE_3413
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSE_3413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
AEV37919
UniProt:
G8PJQ5
LinkDB
All DBs
Position
complement(3712893..3716327)
Genome browser
AA seq
1144 aa
AA seq
DB search
MSSPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGA
GMQPIIGCQVSVNFEDQPDVSGDDAVSDLVLLAANEEGYENLMDLVSRAFLDTEPGFKAN
VPISRVLDKSGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVELQRHNM
KGEEDVEPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDRRQLTP
EHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEAERAEA
EELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADFIKWAK
NEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQNRRE
EVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNPANPCT
LPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQLVPLYR
DPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIPIDDPL
TYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYNAVKHG
EQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIASEMEI
QRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKANYPVEF
LAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAIKGVGE
QAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLLDGLDR
IIGMAQRTEENKNSGQNDFFGGDNAPEPLILNPTDPWLPSERLQKEHAAVGFYISAHPLD
EYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRISDPTGQY
EAVMFSETLNQCRDLLEPGASVVLLVQADMRDEEVSVRISQVEPLEKVAGRVHRTLRIFL
GSDEPIASLQRQLRRGGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMD
VQMS
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctccaggattcgtccatctccgtgttcactcagcttactctctgcttgaaggg
gcattgcctatcggcaagctgattgaccttgcctcaaaggatgagcagcccgcactggcg
atcacggacagtggcaacctttttggtgcgctggagttttctgaaaaggcctttggtgct
gggatgcagccgatcatcgggtgtcaggtctccgtcaactttgaagatcagcccgatgtc
tccggtgatgatgcggtgagcgatctggttttgcttgcggcaaacgaggagggctacgag
aacctgatggatctggtgtctcgtgcgttccttgatacggagccggggttcaaggcgaat
gtcccgatttcgcgggtgcttgataaatcaggtggcgtgattgttttgacgggtgcgagt
gaggggccgatcaactctcagcttcgcgaagggcatgttgatcttgccaaatcccgtctg
gagctgttgcagaacacgtttggggatcgcctctatgtggagctgcaacgccacaatatg
aagggcgaggaagatgttgagcctgagctcctgaaccttgcctatgaattgaatattcca
attgtcgcgaccaacgaagcgttcttcccgaacccggatgattatgaagcacacgatgct
ctgattgcgatttctgaaggtcgcgttcttgttgagaccgaccgacgccagctgacaccg
gagcactgtttcaagacccgcgaacagatgatggagctgttctctgatctgccggaggcg
cttgagaactctgttgtgattgcgcagcgctgtcattatcgcccgttgaaacgcgcacca
atcctgccacgctttgccggggcagatgccgatgctgaagaagccgaacgggcagaggcg
gaagagctgacccgccaggcgaaagaaggcctgcaggcgcgtcttgatgtgcacggtctg
gcgcctgatctggaagagaaagattactgggaccgtctggactacgagttgggcatcatt
atccgcatgaagttcccgggctacttcctgattgttgcggactttatcaagtgggcgaag
aacgaagatattccggtggggccggggcgtggttccggcgcgggctcgctggttgcgtgg
tcactgaccattactgaccttgaccctatgcggttctcgcttctgttcgaacgcttcctg
aacccggaacgtgtgtccatgccggactttgatatcgacttctgccagaaccggcgtgaa
gaagtgatccggtatgtgcagcgtaagtatggccgcgagcaggtggcacagatcatcacc
tacggaacgctgcaggccaaggcggtgctgcgcgatgtggggcgtgttctacagatgcca
tatggtcaggtggaccgcttaagtaagctggtgcctggtaaccctgccaacccgtgcacc
ttgcctgaggcgctggagcaggaacctcggcttcgtgaagctgccaaacaggaagaggtt
gttgatcgccttttgaagatggcgatgaagctggaaggtctttaccgtcacgcgtctacc
cacgcggcgggtgtggtgattggtgaccgtccactggaacagctggtgccgctctaccga
gacccgcgctctgacatgccggttgcccagttcaacatgaagtgggtggaagcggccggt
ctggtgaagtttgactttcttggcctcaaaacgctgacggtgattgatacggcggtttcg
catatcaaaaagcgcggcatcgaagttaagatcgaagagatcccgatcgatgatccgctg
acctataagcttctggcagcgggtgagaccgttggtgtgttccagctggaaagtcagggc
atgcgccgcgcgattgcgggtatgcgccctgaccgtttcgaagatatcgttgcgctggtg
gctctgtatcgtccgggcccgatggacaacattccgatttacaacgccgtgaaacatggc
gagcaggagcctgattatcttcacccgttgcttgagccgatcctgacagagacgaacggt
attatcgtttatcaggagcaggtgatgcagatcgcgcaggtgctttctggttactctctt
ggtgaagcggatttgctgcgccgcgcgatgggtaagaagattgcctctgaaatggagatc
cagcgtgcccgcttcgttgagggggctgttgagcagaaggtggataaagaccaggccggt
atgatttacgacctggtggccaaattcgcgaactacggcttcaacaaatcacacgcggct
gcgtatgcgctggtggcttatcagacggcctggctcaaagcgaactatccggtggagttc
ctcgccggtatcatgacgctcgatcttggcaacacggacaagctgagcgacttccgtcag
gaagcgatgcgcatgggcattgaggtggtgccaccgaacgtcaacaaatccggtgtgcac
tttgatgtgcaggacggcaagatcgtttacgccatgggcgcgatcaaaggcgtgggcgag
caggcggttgaacacattgtggaggtgcgtggtgacgagccatttaaagatctggccgac
tttgcgacccgcatcagtccgaaggttctgaacaagcggaccatcgagaacctgatctct
gccggtgcttttgacgagctcaatccaaaccgcgctcagttgctggatggtctggatcgc
atcatcggcatggcgcagcgtacggaagagaataagaattcggggcagaacgacttcttt
ggtggtgacaacgctcctgagcctttgatccttaatccgaccgatccatggttgccgtcg
gagcgcttgcaaaaggagcatgctgcggttggcttctatatctccgcgcatccgcttgat
gaataccgtgagctcttcaccaaactgcgtgtacagctttggaaggattttgagcgctct
gtgaaagctggttcttccgccgggcgtctggcaggcacggttactgcgaagcaagagcgc
aagacgcgcaccggtaaccagatgggcattgtgcgcatctcggacccgacaggacagtat
gaagcggtgatgttctctgaaacgctgaaccagtgccgcgatctgctggagccgggggct
tctgtcgtgctgcttgtgcaggcggatatgcgagacgaggaagtcagcgttcgcatctcg
caagtggagccgctggagaaggtggcgggcagggtgcatcggacccttcgcatcttcctt
ggctctgatgagccgattgcgagcctgcagcgtcagttgcgccgcggtggggatggtgaa
gtaagctgtgtcgtgctgctggatgatggtcagcgtgaggtggaggtcaagcttccgggc
aattaccagctctcacctcagctttcgggtgcgctgaaaacgctccccggtgtgatggac
gttcagatgtcttag
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