Pseudovibrio sp. FO-BEG1: PSE_3473
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Entry
PSE_3473 CDS
T01669
Name
(GenBank) protein containing Ribonuclease E and G domain
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSE_3473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psf03019
]
PSE_3473
03009 Ribosome biogenesis [BR:
psf03009
]
PSE_3473
Enzymes [BR:
psf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSE_3473
Messenger RNA biogenesis [BR:
psf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSE_3473
Ribosome biogenesis [BR:
psf03009
]
Prokaryotic type
rRNA processing factors
PSE_3473
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
AEV37979
LinkDB
All DBs
Position
3782674..3785733
Genome browser
AA seq
1019 aa
AA seq
DB search
MANKMLIDATHPEETRVTVVRGNRVEEFDFEAANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQLPKEDREALEAQLAAEAAANQRERERREKEEAKREAEIQK
AAAAKAAEASEEVVAELIEAETSALEAEHEAEALASMDAPFQDDSIEDIEAEAPSDEDDT
DAKTADEAAPEGESAEETPAEKASEEAAPVEATTSEETTEEEASDEASEEKAEAEEETAE
AASDADEQDESEDEAQEEVTERPRRLRDNYKIQEVIKRRQLLLVQVVKEERGNKGAALTT
YLSLAGRYSVLMPNTDRGGGISRKITKPTDRKRLKQVAGDLDVPNGMGVILRTAGASRTK
AEIKRDFEYLLRLWENVRELTLDSAAPTLVYEEGSLIKRSIRDLYNKDIDQVLVAGEEGY
REAKDFMRMLMPSHSKNVQPYRDATPIFTRFGVEAQLDAMFSPQVTLKSGGYIVINQTEA
LVAIDVNSGKATREQNIEDTAQATNLEAAEEIARQLRLRDLAGLVVIDFIDMEENRNNRA
VERRLKECLKSDRARIQVGRISHFGLLEMSRQRIRTGVLESSSVVCPHCHGSGIVRSVES
VALHILRSLEDQLLRGSSHNLNLRTPNEVAMYILNQKRHHLMDLERRFGLEISIFGDDSV
TEQHFTLERGELATPSERTQPLPATVQPDTIFPIEEDEDVIEEAADEQKQEASDEDGNDR
RRRRRRRRRRGGDKAEAEQKLDDADPSEEQPSDDEEAAEEKSADAEASDAGDDEDDRRRK
RRRGRRGGRRSRRRNASDENGENAEAAEGAESSEEAERSEEGTADSVEEIIAEAKSETAE
DAAPAEEASAPAEATAETEEEPKKETRKPRRRRRKPAAEKEAASEAKEEAEAPAVQAEAS
EDVAVKEAPAAVEAPVEPVAEVVEAAAEPVAVTADAVAEQPKEEKPAEEPKTEAKEEAPV
AEEAPAVEAAVEVEAPAKPKAPTKPVVTSHKVVEGETVAVESDEDTPRRTGWWQRRSFF
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctgatagatgcgacccacccggaggagacccgggttacggtcgtg
cgcgggaatcgggttgaggaatttgactttgaagcagcaaacagaaagcagcttcgcgga
aatatttatctagctaaagtcaccagagtagagccatctcttcaggcagcgtttgtcgaa
tatggtggcaacagacacgggttcctcgcattcagcgaaatccatccggattattatcag
cttccgaaagaagatcgcgaagctcttgaagctcagcttgcagctgaagccgctgcaaac
cagcgcgagcgcgagcgtcgtgaaaaagaagaagctaagcgtgaagctgaaattcagaaa
gccgccgctgcgaaagccgcagaagcttctgaagaggttgtcgctgagctgattgaagct
gaaaccagcgcgcttgaagccgagcacgaagctgaagcactcgccagcatggatgcgccg
ttccaggacgacagcatcgaggacatcgaagctgaagcaccttctgacgaagatgacaca
gatgcaaagactgctgatgaagctgccccagaaggtgaaagcgcagaggaaactcctgca
gaaaaagcttccgaggaagccgctcctgtagaagcaaccacttccgaagaaacaactgag
gaagaggcttccgacgaagcgtctgaagaaaaggctgaagcagaagaagaaactgcagaa
gcagcctctgacgctgacgagcaggatgaaagcgaagacgaagcgcaggaagaagttacc
gagcgccctcgccgcctgcgcgacaactacaaaattcaggaagtcatcaaacgccgccag
ctgctgctagttcaggtggtgaaggaagagcgcggcaacaaaggcgcagctctaaccaca
tacctgtctctcgctggccgttattctgttctgatgccaaacaccgaccgtggtggcggg
atctctcgtaagatcaccaagccaacagaccgcaagcgcctgaagcaggttgctggtgat
ctggatgtgccaaacggcatgggtgttatcctgcggactgcaggtgcaagcagaaccaaa
gcagaaatcaagcgtgacttcgaatacctcctgcgtctctgggagaacgtccgcgaactg
acccttgattcagcggcccctaccctcgtttatgaggaaggcagcctgatcaagcgctct
atccgtgacctttacaacaaagacatcgatcaggttctggttgctggcgaagaaggctac
cgtgaagcaaaagacttcatgcgcatgctgatgccaagccactccaaaaatgttcagcca
taccgtgacgcgacgccaatcttcacccgtttcggtgttgaggctcagctggatgcaatg
ttctccccacaggtgacattgaagtctggcggttacatcgtcatcaaccagacagaagct
ctggtcgctatcgatgtgaactccggtaaggcaacacgcgaacagaatattgaagacaca
gctcaggcaaccaaccttgaagctgctgaagagatcgcacgtcagctccgcctgcgcgac
ctcgccggccttgtggttatcgacttcatcgatatggaagagaaccgcaacaaccgcgct
gttgagcgtcgcctgaaggaatgcctgaagtctgaccgcgcccgcattcaggttggccgt
atttctcacttcggcctgctggaaatgtcacgtcagcgcatccgtactggcgtactggaa
agctcttccgttgtatgtccgcactgtcatggttctggcatcgtccgttcagtagaatcc
gttgctctgcacatcctccgctctctggaagatcagctgctgcgcggctcctcacataac
ctgaacctgcgcacgccaaacgaagtggcaatgtacatcctgaaccagaagcgccatcac
ctgatggatctggaacgccgcttcggtctggaaatctccatttttggtgacgacagcgtt
accgagcagcacttcactctggagcgcggtgaactcgcaacaccaagcgaacgcacccag
ccgctgcctgcaaccgttcagccggacaccatcttcccgattgaggaagatgaagacgtg
atcgaggaagccgcagacgagcagaagcaggaagcttctgacgaagatggcaacgatcgt
cgccgtcgccgtcgtcgccgccgccgtcgcggtggagacaaggctgaagcagaacagaag
ctggacgatgctgatccgtctgaagaacaaccttctgatgacgaagaagccgctgaagaa
aaatctgcggatgctgaagcatcagacgcaggtgatgatgaggacgatcgccgccgtaag
cgtcgtcgcggtcgccgtggtggccgtcgctcacgccgcagaaatgcatctgatgaaaac
ggcgagaacgcagaagcagctgaaggcgcagaatcttctgaagaagctgagcgctccgaa
gaaggcacagcggacagcgtagaagaaatcatcgctgaggcaaaatctgaaaccgctgaa
gatgcagcaccggcagaagaagcttctgcgcctgctgaagccacagcggaaactgaagaa
gagccaaagaaagagacacgcaagccgcgtcgtcgtcgcagaaagcctgctgcagaaaaa
gaagcagcttctgaagccaaggaagaagccgaagcacctgctgttcaggcagaagcttcc
gaagacgtagccgtcaaagaagctccagctgcagtagaagcaccggttgaacctgtcgca
gaagtggttgaagcggcagcagagcccgtcgctgtgacagctgacgctgttgctgagcag
ccgaaggaagaaaagccagctgaagagccaaagaccgaagcaaaggaagaagctcctgtt
gctgaggaagctccagcggtagaggcagcagttgaagttgaagctccggcaaagccaaag
gcaccaaccaagccagtcgtcacctctcacaaggtggttgaaggtgaaaccgtagcggtt
gagagcgatgaagacacaccacgccgcaccggctggtggcagcgccgctctttcttctag
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