Pseudovibrio sp. FO-BEG1: PSE_3887
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Entry
PSE_3887 CDS
T01669
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSE_3887 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psf03021
]
PSE_3887 (rpoC)
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_3887 (rpoC)
Enzymes [BR:
psf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSE_3887 (rpoC)
Transcription machinery [BR:
psf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSE_3887 (rpoC)
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSE_3887 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AEV38391
UniProt:
G8PQ77
LinkDB
All DBs
Position
complement(4209992..4214194)
Genome browser
AA seq
1400 aa
AA seq
DB search
MSQEVMNLFNQQAPAQTFDHIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGMLLDMTLKDLERILYFENYVVIEPGLTPLKLRQLLSEEEYVAAQDEYGEDSFTA
MIGAEAIREILASMDLQRESEKIRQEIAEATTELKPKKLAKRLKVVEAFIESGNRPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVIQGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMAEGEPGEGMAFGNMGELHHALE
NGVITVHSKIRGRFKTVDELGNPTSEIYETTPGRLMIAELLPKHFEVPFDVCNKLMTKKE
ISKMIDTVYRACGQKETVIFCDRVMQLGFKNACRAGISFGKDDMVIPGTKAKLVDDTAAM
VAEYEQQYNDGLITQGEKYNKVVDAWAKCTDKVADEMMGRISATEFEEDTGRQKQMNSVY
MMAHSGARGSPAQMKQLGGMRGLMAKPDGSIIENPIIANFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEVDCGSEGGITVQPIVDAGNVIATLGMRVLGRT
AAEDVVNNKTGEVIVPKGRLIDEKDVEQIEAAKVQMVKIRSVLTCETKTGVCATCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNFEGTVTIRNRN
VVRDSDGNNIVMARNMSVVIVDSDGNERSSHRLTYGGKVFVDEGDTIKRGDRISEWDPYT
RPILTEVSGRVGFEDLVDGASVQETADEATGITKRVVIDWRSAQRSADLKPAMVVQDENG
KIKKLARGGDARSLLSVDAILSVQPGDMVSAGDVLARILLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAETDGTIRFGRDYKNKRRIIIDPTDESLEPVEYLIPKNKHFHLQEGDTIE
KGEYLIDGNPAPHDILAIKGVEALAAFLVNEIQEVYRLQGVGINDKHIEVIVRQMLQKVE
ITDPGETEFFSGEQVDKIDFEEANQRAIDNARDPAKGVPVLLGITKASLQTRSFFSAASF
QETTRVLTEAAVFGKIDPLDGLKENVIVGRLIPAGTGGAMNRTRKIATLRDDLIQDARRA
ASTANTADSMLEDFSRGEQF
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaagaggtcatgaacctgttcaatcaacaggctcccgcacagaccttcgatcat
atccgcatctcgatcgccagcccggagaaaattctgtcctggtcgttcggtgagatcaaa
aagccggagacgatcaactacagaactttcaagccagagcgcgacgggctgttctgtgct
cggattttcggtcctatcaaggactatgagtgcttgtgcggtaagtataagcgcatgaaa
tataaaggcgttatctgtgagaagtgtggcgttgaagtcaccttgtcccgtgtacgccgt
gaacgtatgggccacattgagcttgctgctcctgttgcgcatatctggttcctgaagtcg
ctgccatctcgtatcggcatgcttctggatatgacgcttaaggatcttgagcgcatcctg
tacttcgagaactacgttgttattgagccaggccttactcctttgaagctgcgtcagctg
ctttctgaagaagagtatgttgctgctcaggacgaatacggtgaagacagcttcactgct
atgatcggtgctgaagcgatccgcgagatccttgcaagcatggatctgcagcgtgaatct
gaaaagatccgtcaggaaatcgcagaagcaaccactgagctgaagcctaagaaactggcg
aagcgtctgaaggttgttgaggcgttcatcgagtccggaaaccgtcctgaatggatgatc
ctgactgttgttccagtcattccaccggatcttcgtccgctggttccactggacggtggc
cgttttgcgacgtctgatctgaacgatctttatcgtcgtgtgatcaaccgtaacaaccgt
ctgaagcgtctcattgaactgcgtgcgccggatatcattatccgtaacgaaaagcgtatg
cttcaggagtccgtggatgcgctgttcgataacggtcgtcgtggccgtgtgatccagggt
gcaaacaagcgtcctctgaagtccctctcagacatgctgaagggtaagcagggtcgtttc
cgtcagaaccttcttggtaagcgtgtggactactccggtcgttccgttattaccgtgggt
cctgaactgaagctgcaccagtgtggtctgcctaagaagatggcgcttgagctgttcaag
ccgttcatctactcccgtcttgacgcgaagggctattcttccactgttaaacaggcgaag
aagctcgttgaaaaagagcgtccggaagtttgggatatccttgatgaagtgatccgtgag
cacccagttcttctgaaccgtgcgcctacgcttcaccgtcttggtattcaggcattcgaa
ccaaccctgattgaaggtaaggcaatccagctgcacccgctcgtctgttccgcgtttaac
gctgacttcgacggtgaccagatggctgttcacgttccgctttctctggaagcgcagctt
gaagcccgtaccctcatgatgtctaccaacaacattctgcacccggcgaacggtggtccg
atcatcgtgccgtctcaggatattgttcttggtctctactatctgtccatcatggcagaa
ggtgagccaggagaaggcatggccttcggtaacatgggtgagctgcatcacgcgcttgag
aacggtgttatcactgttcactccaagatccgtggccgcttcaagactgttgatgagctg
ggcaacccaacctctgaaatctatgagaccactccaggtcgtctgatgattgcagagctg
ctgcctaagcacttcgaagttccgttcgacgtctgtaacaagctgatgacgaagaaagaa
atctctaagatgatcgacacggtttaccgtgcttgtggtcagaaagagacagtcatcttc
tgtgaccgcgttatgcagctgggcttcaagaacgcatgtcgcgctggtatctccttcggt
aaggatgacatggttatccctggcaccaaggcgaagctggttgatgacaccgcagcaatg
gttgctgaatacgagcagcagtacaatgacggtctgatcacccagggcgagaaatacaac
aaggttgttgacgcttgggcgaaatgtactgacaaagttgctgatgaaatgatgggccgc
atctctgcgaccgagttcgaagaggacacaggtcgtcagaagcagatgaactctgtttac
atgatggctcactccggtgctcgtggttctccagcacagatgaagcagctcggtggtatg
cgtggtctgatggcgaagccggacggctccatcatcgaaaacccgattatcgcgaacttt
aaagaaggtctgtcggttctcgagtacttcaactccacccacggtgcccgtaagggtctt
gccgatacggcgttgaagactgcgaactccggttacctgacccgtcgtcttgttgacgtg
gcgcaggacagcatcattcttgaagttgactgtggttccgaaggtggcatcaccgttcag
ccaatcgttgatgctggtaacgtgatcgcgacccttggtatgcgtgttctgggccgtacg
gctgcagaagacgtggtcaacaacaagaccggtgaagtgatcgttcctaagggacgtttg
attgacgagaaggacgttgagcagattgaagctgccaaggttcagatggtcaagatccgc
tccgtgctgacctgtgaaaccaagaccggtgtatgtgcgacctgttatggccgtgacctt
gcacgtggtactccggtgaacatcggtgaggctgttggtgttatcgctgcgcagtccatt
ggtgagcctggtactcagctgaccatgcgtacgttccacattggtggtacggcacaggtt
gttgacagctccttcatcgaatccaacttcgaaggtactgtgacaatccgtaaccgcaac
gtggttcgcgactctgacggcaacaacatcgtcatggcacgtaacatgtctgttgtgatt
gtcgacagtgacggcaacgagcgttcttctcaccgtctgacttacggtggtaaggtcttc
gttgacgaaggcgacaccatcaagcgtggtgaccgtatttccgaatgggatccatacacc
cgtccgatcctgaccgaagtttccggtcgtgtaggcttcgaagatctggttgatggtgca
tctgttcaggaaaccgccgatgaggcgaccggtatcaccaagcgtgtggtcattgactgg
cgttctgctcagcgtagtgctgatctgaaacctgcgatggttgttcaggacgaaaacggt
aagatcaagaaactggctcgcggtggcgatgcacgttctctgctctccgttgacgcaatt
ctgtccgttcagccgggcgacatggtttctgctggtgacgttcttgcacgtattcttctg
gaatctgcgaagacgaaagacattaccggtggtctgccacgtgttgcggaactgttcgaa
gcacgtcgtccgaaggatcacgcgattatcgctgagactgacggtacgatccgctttggc
cgagactacaaaaacaagcgccgtatcatcatcgatcctaccgatgagagcctggagcct
gttgagtacctcattccgaagaacaaacacttccacctgcaggaaggtgacaccatcgag
aagggtgaatacctgatcgacggtaatccggcaccgcatgacattctggcgattaagggc
gttgaggcactggctgccttcctcgtcaacgagatccaggaagtttaccgtctgcagggc
gtgggcattaacgacaagcacatcgaagtgattgttcgtcagatgctccagaaagtagag
atcaccgatccgggcgagacagagttcttctctggtgagcaggttgataagatcgacttc
gaagaagcaaaccagcgtgcaatcgataatgcacgtgaccctgctaagggtgttccagtt
ctgctgggtatcaccaaagcaagcttgcagactcgttcgttcttctctgctgcatcgttc
caggagacaactcgcgttctgactgaggcagctgtcttcggtaagatcgatcctctggat
ggtctgaaagagaacgtgatcgttggtcgtctgatccctgcgggtacaggcggagcgatg
aaccgcactcgcaagatcgcgaccctgcgtgatgatctcattcaggatgctcgccgtgca
gcttcaactgcaaacactgcggactccatgctggaagatttcagccgcggcgaacagttc
taa
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