Pseudovibrio sp. FO-BEG1: PSE_4251
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Entry
PSE_4251 CDS
T01669
Name
(GenBank) DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psf
Pseudovibrio sp. FO-BEG1
Pathway
psf03420
Nucleotide excision repair
psf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSE_4251
03430 Mismatch repair
PSE_4251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psf03400
]
PSE_4251
Enzymes [BR:
psf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSE_4251
DNA repair and recombination proteins [BR:
psf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSE_4251
MMR (mismatch excision repair)
Other MMR factors
PSE_4251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AEV38755
UniProt:
G8PU03
LinkDB
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Position
complement(4601756..4604161)
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AA seq
801 aa
AA seq
DB search
MPSNPADPLAAPQPKAGGIAARAMAARQTTMPAYMEGLNAEQRLAVETINGPVLVLAGAG
TGKTRVLTTRIAHILATGHATPGQILAVTFTNKAAREMKERIGAYIGENVEGMAWLGTFH
AICVKILRRHAELVGLKSSFSILDTDDQVRLIKQIIQAEGLDEKRWTAKTFAGLLDSWKN
RGLTPEQISAGEAQAFANGLGRKLYQTYQERLSILNACDFGDLLLHCITIFKEHDDVLKS
FQSRFRYMLVDEYQDTNIAQYMWLRLLAQGNSNVACVGDDDQSIYGWRGAEVDNILRFEQ
DFPGATVVRLERNYRSTSHILSAASHLIAHNQGRLGKTLFTDQMGSEDEDKVQVASAWDS
QEEARSIGDEIEALQNHGHSLNEMAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERM
EIRDALAYFRCVMQPSDDLAFERIVNTPKRGLGEATLKIVHAYARERAIPLMIAAGELVQ
TNELRPKVRAALADVLGMFENWRNQVETMSHTELAEIILDESGYTQMWRQDRSAEAPGRL
DNLKELIRSMEEFESMAGFLEHISLVMDKDSDVEEDAVSIMTLHSAKGLEFDTVFLPGWE
EGVFPNQRALDETGQAGLEEERRLAYVGLTRGRKRVKVWFTSNRRIHGSWQSCIPSRFLD
ELPADSVEVVEASSSYGGYGLNSAGGGYGASRFDNSDPFQSKYSTPGWQRARKAQASGQQ
YGRMHGGNQTRRAKKAGPMTIEGELVAKSVTEVGSDFAIGERIFHMKFGYGAISDIEGNK
LTVDFEKAGQKKVLDSFVERA
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgccttccaaccctgctgatcctctggctgcaccacagcccaaggcaggtggtatagcg
gcaagggccatggcagcacggcaaacgaccatgcctgcctatatggaaggattgaatgcg
gaacagcgccttgctgttgagacgatcaacggtccggtgctggtgcttgctggcgcaggt
acgggtaagacgcgcgttctgacaacgcgtatcgcccatattctggcgacagggcatgct
actccggggcagatccttgcagtgaccttcaccaacaaagcggctcgcgagatgaaggag
cgcattggcgcttacattggcgagaacgtggagggcatggcgtggctgggtacgttccac
gcgatctgtgtgaagatcttgcgccgtcatgccgagctggttggtctgaaatcctccttc
tccattctggatacggatgatcaggttcgcttgatcaagcagatcattcaggcggaaggt
ctggatgaaaagcgttggacggcaaagacttttgccggattgctggacagctggaagaac
cgcgggctgacgccggaacagatttctgccggcgaagcgcaggcctttgcgaatggtttg
gggcgcaagctctaccagacctatcaggaacggctctccattctgaacgcctgtgacttt
ggtgatttgctgctgcattgcatcaccatcttcaaagagcatgatgatgttctgaagagc
ttccagagccgtttccgctacatgctggtggacgagtatcaggacaccaacatcgcgcag
tacatgtggctgcgtctgctggcacagggcaactccaacgttgcctgtgtgggtgatgat
gaccagtcgatctatggctggcgtggtgctgaagttgataacatcctgagatttgagcag
gatttcccgggcgcgaccgtggttcgtctggagcggaactaccgctcgaccagccacatt
ctgtctgctgcctctcatttgattgcccacaatcagggccgactgggcaagaccctattt
accgatcagatgggatctgaggatgaagataaggtgcaggttgcctctgcctgggattct
caggaggaagcgcgctccatcggtgatgagattgaagcgctacagaaccacggtcattcg
ctgaatgagatggccattctggtgcgagcttcgttccagatgcgagagtttgaagaccgg
tttgtaacgcttggcctgaattaccgcgtgattggcggcccacgcttctacgagcgcatg
gaaatccgtgatgcgctggcctacttccgctgtgtgatgcaaccctctgatgatctggcg
tttgagcgtattgtgaacacgccgaaacgtggacttggtgaggccactctgaagattgtg
catgcctatgcgcgggagcgggctattccgttgatgattgcggcgggagagctggtgcag
accaatgagctgcggcctaaagtgcgtgctgctttggctgatgttcttggcatgtttgag
aactggcgcaatcaggttgagaccatgagccatacggagcttgcggaaattatccttgat
gagagcggttatacccagatgtggcgtcaagaccgttccgcagaagcgccgggacgactg
gacaacctgaaagaacttatccgctctatggaagagttcgagagcatggctgggttcctt
gagcacatctcgctggtgatggataaggacagcgatgtggaagaggatgcggtgtccatc
atgacgctgcattccgcaaaaggccttgagtttgatacggttttcctgccgggctgggaa
gagggtgtgttcccgaaccagcgggcattggatgagaccgggcaggctggtctggaagaa
gagcggcgtcttgcgtatgtgggtcttacccgtggtcgtaagcgtgtgaaggtgtggttc
acctctaaccgccgcatccatgggtcctggcagtcctgtattccctcccgcttcctggat
gagttacccgcggacagcgttgaggttgttgaggcctccagctcctacggtggctatggt
ctgaacagcgctggcggtggttatggtgccagcaggtttgacaacagcgacccgttccag
agcaagtactccaccccaggctggcaacgcgcccgcaaggcgcaggcctctggtcagcag
tatggccgaatgcatggtgggaaccaaactcggcgcgccaagaaggctggtccgatgacc
attgaaggtgagttggtggccaagagcgttactgaggttggcagtgattttgccattggt
gagcgcatcttccatatgaagtttgggtacggtgccatcagcgacattgaggggaataag
ctcactgtcgactttgaaaaggctggccagaagaaagtgctcgatagctttgtcgagcgg
gcataa
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