Pseudocitrobacter corydidari: G163CM_00870
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Entry
G163CM_00870 CDS
T07750
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psgc
Pseudocitrobacter corydidari
Brite
KEGG Orthology (KO) [BR:
psgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psgc03009
]
G163CM_00870 (srmB)
Enzymes [BR:
psgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G163CM_00870 (srmB)
Ribosome biogenesis [BR:
psgc03009
]
Prokaryotic type
rRNA helicases
G163CM_00870 (srmB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF561
AAA_22
Shikimate_DH
CMS1
Motif
Other DBs
NCBI-ProteinID:
UGS39410
LinkDB
All DBs
Position
complement(99496..100824)
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AA seq
442 aa
AA seq
DB search
MTVTTFSELELDESLLDALQSKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKNTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNLEHKVELLK
HLLKQEDMTRAIVFVRKRERVHELAEMLRAAGINNCYLEGEMAQIKRTEGIKRLTEGRVN
VLVATDVAARGIDIPDVSHVINFDMPRTGDTYLHRIGRTGRAGRKGTAVSLVEAHDHLLL
QKIGRYIEEPLKARVIDELRPTTRAPSEKMTGKPSKKVLAKRAEKKKEKDKEKPRVKVRH
RDAKNVGKRRKPSGTPPQSTEE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaacttgaacttgatgaaagcctgctggatgccctccag
agcaaaggctttacacgcccgaccgccatccaggctgccgccattccgcctgcgctcgat
ggacgtgatgttttgggttctgcgcccaccggcaccggtaaaacagcggcgtatctgctg
cctgcgttgcagcatctgctcgacttcccgcgcaaaaaatccggcccgccgcgcattttg
atcctgacgccaacgcgtgaactggcgatgcaggtagccgaccacgcgcgcgagctggcc
aaaaatacccatctcgatatcgccaccattaccggcggtgtcgcgtacatgaaccacgct
gaagtcttcagcgaaaaccaggatatcgtggttgccaccaccggtcgcctgttgcagtac
atcaaagaagaaaactttgactgccgtgccgtcgagaccttaattcttgacgaagctgac
cggatgcttgatctcggctttgcgcaggatatcgaacacattgccggtgaaacccgctgg
cgtaagcagacgctgctcttctccgccacgcttgaaggcgatgcgattaaagattttgcc
gagcgtctgctcgaagatccggttgaagtttctgctaatccgtccacccgtgaacgcaag
aaaattcatcagtggtactaccgtgcggataacctggaacacaaagttgagctgctcaag
caccttctgaaacaagaagatatgacgcgcgctatcgtgtttgtacgtaaacgtgagcgt
gtgcatgaacttgctgaaatgctgcgtgccgccgggatcaacaactgctatctcgaaggc
gaaatggcgcagatcaagcgtaccgaagggatcaagcgtctgacggaaggccgcgtaaac
gtgctggttgcgaccgacgttgccgctcgcggtattgatattccggatgtcagccacgtg
attaatttcgatatgccccgcaccggcgatacctatctgcaccgtattggccgtaccggc
cgcgcgggccgtaaaggcacagcggtttctctggttgaagcgcatgaccatctgctgctg
cagaaaattggtcgttacatcgaggagccgctgaaagcacgcgtcatcgatgaactgcgc
ccaacgacgcgtgcgccaagcgaaaaaatgaccggtaagccgtcgaagaaagtgctggca
aaacgcgccgaaaagaaaaaagagaaagataaagaaaaaccgcgcgtgaaagtacgccat
cgcgacgcgaagaatgtgggtaagcgccgtaagccaagcggcacgccaccacaatcgact
gaagagtaa
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