Pseudocitrobacter corydidari: G163CM_14710
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Entry
G163CM_14710 CDS
T07750
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psgc
Pseudocitrobacter corydidari
Brite
KEGG Orthology (KO) [BR:
psgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psgc03032
]
G163CM_14710 (topA_1)
03400 DNA repair and recombination proteins [BR:
psgc03400
]
G163CM_14710 (topA_1)
Enzymes [BR:
psgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G163CM_14710 (topA_1)
DNA replication proteins [BR:
psgc03032
]
Prokaryotic type
DNA Topoisomerases
G163CM_14710 (topA_1)
DNA repair and recombination proteins [BR:
psgc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G163CM_14710 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UGS40772
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Position
complement(1600314..1602911)
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSASTKTAKKPK
KDERGALVNRMGVDPWHDWKAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDSRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVVASTTTPGGDALPLEVTH
QKDKAFRPVSRDETMAAVSLLEKASYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVRGYIGDNFGDKYLPKNPNQYASKEN
SQEAHEAIRPSDVSVVAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVQAGDF
KLKARGRTLRFDGWTKVMPALRKGDEDRTLPMVNQGDKLSLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRTENRRFYAEKMGEIVTDRLEANFRELMNY
DFTAQMEDHLDRVANHEAEWKQVLDLFFGDFTKQLETAEKPPEEGGMQPNEMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELFRFRDRLPEKLRYLADAPQEDPQGNKTMVRFSRKTKQQYV
SSEKDGKATGWSAFFVDGKWVEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgatcaataagtat
ctgggtaatgactacgtggttaagtccagcgtcggtcatatccgcgatttgccgacaagt
ggctcagccgccaaaaagagcgctgactctgcctccaccaaaacggccaaaaagcctaaa
aaggatgaacgtggcgcgctggttaatcgcatgggcgttgacccatggcatgactggaaa
gcgcactacgaagtgctcccgggtaaagaaaaggtagtttcagaacttaagcaactggcg
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgattggtggagatgattcgcgctatagccgcgtggtgttcaac
gaaattacaaaaaatgcgattcgtcaggcgtttgaaaagccgggcgaactgaatatcgat
cgtgttaacgcgcagcaggcgcgtcgctttatggaccgcgtagtgggctatatggtgtcg
ccgttgctgtggaaaaaaatcgcccgtggtttgtccgcaggccgcgtgcagtccgttgcc
gtgcgtctggtggttgagcgcgaacgcgaaatcaaagccttcgtaccggaagagttctgg
gacgtggtagccagcaccactacgccgggcggcgatgcgttgccgctggaagtgacgcat
cagaaagataaagccttccgtccggtaagccgcgacgagacaatggccgccgttagcctg
ctggaaaaagcgagctacagcgtccttgagcgtgaagataaaccgaccagcagcaaacct
ggcgcgccttttatcacttccacgttacagcaagccgccagcacacgtctgggctttggc
gtgaaaaaaaccatgatgatggcgcagcgtctgtatgaagcaggccacattacttatatg
cgtaccgactctaccaacctgagccaggacgcagtaagcatggtgcgtggttatatcggc
gataactttggtgataaatatctgccgaagaacccgaaccagtacgccagcaaagagaat
tctcaggaagcgcacgaagcgattcgtccttccgatgtctcggtggtggctgaatcgctg
aaagatatggaagccgatgcgcaaaaactgtatcagctgatctggcgtcagttcgtcgcc
tgtcagatgacaccggcgcagtacgactccacgacgctgacggtgcaggcgggtgatttc
aaactcaaggcgcgcggtcgtaccctgcgttttgatggctggacgaaagtcatgcctgcg
ctgcgcaaaggcgatgaagatcgcacgctgccaatggttaatcagggagacaaactctct
ctggttgaactgacgccagctcagcatttcaccaaaccgccggcgcgctttagcgaagcc
tcactggttaaagagctggaaaaacgcggtattggccgtccgtccacctatgcgtcgatc
atttcgaccattcaggatcgcggctatgtgcgcaccgaaaaccgtcgtttctacgctgaa
aaaatgggtgagatcgtcaccgatcgtctggaagcgaacttccgcgaactgatgaactac
gattttaccgcacagatggaagaccatctcgaccgcgtggcaaaccacgaagccgagtgg
aagcaggtgctggatctcttcttcggtgatttcaccaaacagctcgaaacggctgagaaa
ccgccagaagagggtggcatgcagccgaacgagatggtgctaaccagcatcgattgcccg
acctgcggtcgcaagatgggtattcgtaccgccagcacgggggtattcctgggctgctcc
ggttatgcgctgtcgccgaaagagcgctgcaaaaccaccatcaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgatgacgctgaaaccaacgcgctgcgcgcaaaacgt
cgctgccagaaatgcggcacggcgatggacagctatctcatcgatccgaagcgcaagctg
cacgtttgcggtaataacccgacctgtgacggttacgagatcgaagagggtgaattccgc
atcaagggttatgacggcccgatcgtcgagtgcgagaaatgtggttctgaaatgcacctg
aaaatggggcgttttggtaagtacatggcctgcactaacgaagagtgtaaaaacacccgt
aagatcctgcgtaacggtgaagtcgctccgccgaaagaagatccggttccgttgccggag
ttgccgtgcgagaaatctgacgcctacttcgtactgcgtgatggtgctgccggggtcttc
ctggcggcgaacaccttcccgaaatcgcgtgaaacccgcgcgccgttggtcgaagagctg
ttccgattccgcgatcgtctgccggagaaactgcgttatctggccgatgcgccgcaggaa
gatccacaaggtaataagacgatggtgcgcttcagccgtaagacgaagcagcagtatgtt
tcttctgagaaagatggcaaagcgacaggttggtctgccttctttgtcgacggtaaatgg
gtcgaagcgaagaaataa
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