Pseudocitrobacter corydidari: G163CM_16190
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Entry
G163CM_16190 CDS
T07750
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psgc
Pseudocitrobacter corydidari
Pathway
psgc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G163CM_16190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psgc03400
]
G163CM_16190 (mfd)
Enzymes [BR:
psgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G163CM_16190 (mfd)
DNA repair and recombination proteins [BR:
psgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G163CM_16190 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UGS40920
UniProt:
A0ABY3S2M0
LinkDB
All DBs
Position
1751080..1754526
Genome browser
AA seq
1148 aa
AA seq
DB search
MPELARYALPTKAGDQRQLGELTGAACATLVAEISERHAGPVILIAPDMQNALRLHDEIS
QFTDNLVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPMMQRGVLIVPVSTLMQRVCPH
SYLHGHALMMQKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRVFDPDSQRTLEEVDSINLLPAHEFPTDKTAIELFRSQWRDKFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLDASATRFQADAQ
ARFENRGVDPMRPLLEPELLWLRPDELNSELKKWPRIQLKTEHLPEKAANTNLGFQPLPE
LAIQAQNKAPLDNLRRFLESFTGPVIFSVESEGRREALGELLARIKLSPKRILRLDEATD
TGRYLMIGAAEHGFIDTQNNRALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANEAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKASEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREILRGGQVYYLFNDVENIQKTADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSESELDEIKVELIDRFGLLPDAARTLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPSWLIGLLQKQPQHYRLDGPTRLKFFQDLSERKARMEWVRQFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactagcccgttacgccctacccaccaaagctggcgatcagcgtcaactgggg
gaactgaccggtgcggcctgcgccacgctggtcgcggagatttccgaacgtcatgccggc
ccggttatcctgattgcgccggatatgcaaaatgccctgcgactgcacgatgaaatcagc
cagtttaccgataatctggtaatgaacctcgccgactgggaaacgctgccgtacgacagt
ttctcgccgcatcaggacatcatttcgtcacgtctttcaacgctttatcagttgccaatg
atgcagcgcggcgtgctgatagtgcccgtaagcacactgatgcagcgcgtttgcccgcac
agttatctgcacggccacgcattgatgatgcaaaaaggccagcgtctgtcgcgcgatgcg
ctacgtgcgcagctcgatagcgcgggttatcgccacgtggatcaggtaatggagcacggc
gagtacgccacgcgcggtgcgctgctcgacctcttcccgatgggcagcgagcagccctat
cgtctcgatttcttcgatgatgaaatcgacagcctgcgcgtgttcgacccggacagccaa
cgcacgctggaagaagtcgactccattaatcttctgcctgcacacgagtttccgacggat
aaaaccgccatcgagctgttccgcagccagtggcgcgataagttcgatgtgaagcgcgat
gctgagcatatctatcaacaggtgagtaaaggtacgctgcctgcgggcatcgagtactgg
cagccgctgttctttagcgaaccgctaccgccgctgttcagctacttcccggccaatacg
ctactggtcaataccggtgacctcgacgccagcgccacgcgcttccaggcggatgcacag
gcgcgcttcgagaatcgcggcgtcgacccgatgcgcccgttactggagccggaactgctg
tggctgcgcccggacgagcttaacagcgagttaaaaaaatggccgcgcattcagcttaaa
acagagcatcttccggagaaagccgccaatactaacctcggcttccagccgctgccggag
ctggcgattcaggcgcaaaacaaagcgccgctggataacctgcgccgcttcctggaatcc
ttcaccggcccggtgattttctccgtagagagtgaaggccgtcgggaagcgttaggcgag
cttctggcgcgtattaagctgtcgccaaaacgtattctgcggctggatgaagccacggac
accgggcgctatctgatgattggcgcggcggagcacgggtttatcgacacgcagaataac
cgggcgctgatttgcgaaagcgacctgctgggcgagcgcgtggcgcgacgtcggcaggac
tcccgacgcaccatcaatccggataccttaatccgcaacctggctgagctgcatattggc
cagccggtggtgcatctggaacacggggttggccgctacgccgggatgaccacgctggag
gccggtggcatcaaaggcgaatacctgatgctgacctacgccaacgaggccaaactgtat
gtaccggtctcctcgttgcatctgattagccgctacgcgggtggtgcggaagaaaatgcg
ccgctgcataaactgggcggcgatgcctgggcacgcgcccgacagaaagcctctgagaaa
gtgcgcgatgtcgcagccgagttgcttgatatttatgcccagcgtgcagcgaaagaaggc
tttgcctttaaacacgatcgtgaacagtatcagcttttctgcgatagcttcccgtttgaa
accacgccagatcaggcgcaggccattaatgctgtgttgagcgatatgtgccagccgctg
gcgatggaccgactggtgtgcggcgacgttggctttggtaaaaccgaagtggcgatgcgc
gccgcattcctcgccgtcgaaaacaacaaacaggtggccgtgctggtgccgactaccctg
ctggcgcaacagcactacgataacttccgcgaccgttttgccaactggccggtgcgcatt
gaaatgctctcccgcttccgtagcgccaaagagcaggcacaaattctggaacaggtggcg
gaaggtaaaatcgacattctgataggcacccacaagctgttacaaagcgatgtgaagctg
aaggatttaggcctgttaattgtcgatgaagagcaccgcttcggcgtgcgccacaaagaa
cgcattaaagcgatgcgcgccgacgtggatatcctgacgctcaccgccacgccaatcccg
cgtacgctgaatatggcgatgagcggcatgcgcgatttgtcgattattgccacgccaccg
gcgcgccgactggcggtgaaaaccttcgtgcgtgaatacgataacctggtggttcgtgaa
gccattctgcgtgaaattttgcgtggcggtcaggtctactacctgttcaatgacgttgaa
aacatccagaaaacagcggataaactggccgaactggtgccggaagcgcgtatcgcgata
ggccatggtcagatgcgcgaacgtgaactggaacgcgtgatgaacgattttcaccaccag
cggtttaatgtgctggtatgtaccaccatcatcgagaccggtatcgacattccgaccgcc
aataccatcattattgagcgggcggatcacttcggcctggcgcagctgcaccagttgcgt
ggccgcgtggggcgttcgcatcaccaggcctatgcctggctgctgaccccgcatccaaag
gcgatgaccaccgatgcgcagaaacgtctggaagccattgcttcgctggaagatctcggt
gctggattcgcgctggcgacccacgaccttgaaattcgcggcgcgggggaactgcttggc
gaagatcagagcggttcaatggaaaccattggcttctcgctctatatggagcttttagaa
aacgccgttgatgcgctgaaagaaggccgtgagccgtcgttggaagatctcaccagccag
caaacggaagtggagctgcgtatgccgtctctgctgccggatgatttcattcctgatgtg
aatacgcgtctctccttctacaagcgtatcgccagtgcgaaaagcgaaagcgagctggat
gaaatcaaagtggaactgattgaccgctttggcctgttgccggatgcggcgcgcacgctg
ctggatatcgcgcgtctgcgtcaacaggcgcagaaactgggtattcggaagctggaaggc
aatgagaaaggcggcgtgattgagttcgcggagaaaaaccacgtcaatccgagctggctg
attggtctgttgcaaaaacagccacagcactatcgtctggacggcccaacgcggctgaag
ttcttccaggacctgagcgagcgtaaagcgcgcatggaatgggtgcgacagtttatgcgt
cagttagaagagaacgccatcgcgtaa
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