KEGG   Pseudocitrobacter corydidari: G163CM_31230
Entry
G163CM_31230      CDS       T07750                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
psgc  Pseudocitrobacter corydidari
Pathway
psgc02024  Quorum sensing
psgc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psgc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G163CM_31230 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    G163CM_31230 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psgc03019]
    G163CM_31230 (hfq)
   03036 Chromosome and associated proteins [BR:psgc03036]
    G163CM_31230 (hfq)
Messenger RNA biogenesis [BR:psgc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     G163CM_31230 (hfq)
Chromosome and associated proteins [BR:psgc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    G163CM_31230 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Herpes_capsid
Other DBs
NCBI-ProteinID: UGS42394
UniProt: A0ABY3S8H5
LinkDB
Position
complement(3349039..3349350)
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSNAQGSTTAQQDSDDTE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccgttcctgaacgcactacgtcgggagcgtgtt
ccggtttctatttatttggtgaatggtattaagctgcaaggtcaaattgagtccttcgac
cagttcgtgatcctgttgaaaaacacggtcagccagatggtctataagcacgcaatttcc
actgttgttccgtcccgtccggtatctcatcacagcaataacgctggcggcggcaccagc
agtaactaccatcatggtagcaacgcgcagggttcaaccactgcgcagcaagacagcgac
gacacagaataa

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