Pseudocitrobacter corydidari: G163CM_41520
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Entry
G163CM_41520 CDS
T07750
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psgc
Pseudocitrobacter corydidari
Pathway
psgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G163CM_41520 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psgc03019
]
G163CM_41520 (deaD)
03009 Ribosome biogenesis [BR:
psgc03009
]
G163CM_41520 (deaD)
Enzymes [BR:
psgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G163CM_41520 (deaD)
Messenger RNA biogenesis [BR:
psgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G163CM_41520 (deaD)
Ribosome biogenesis [BR:
psgc03009
]
Prokaryotic type
rRNA helicases
G163CM_41520 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
UGS43378
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All DBs
Position
4454227..4456176
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AA seq
649 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDLYRGLLAKIQPTAEGEELD
IETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRAPRGDREDRPRRER
RDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPRPERSGGRGFGGERREGGRGEGRGFGGERREGRGF
GGERREGGRGDGRRFSGERRDGGRAPRRDDAAAPRRDDSSSRRRFGGDA
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcatcccgcacctg
ctgggcggtcgtgacgtgctgggcatggcccagacaggtagtggtaaaaccgcagcgttt
tccctgccactgctgaacaatcttgatcctgagctgaaagcacctcaaatcctggtgctg
gcaccgacccgcgaactggcggttcaggttgctgaagccatgacggatttctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aaacgcggcaccctggacctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccagaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgacgacccgtcctgacatc
agccagagctactggactgtgtggggcatgcgtaaaaacgaagcactggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggcagaagctcttgagcgtaacggctacaacagcgccgcgctgaatggtgacatgaac
caggcactgcgtgagcagacgctggaacgcctgaaagatggtcgtctggacatcctgatc
gcgaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtcgtaaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtcgaactgccgaacgcagaactgctgggc
aaacgtcgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatctctaccgtggcctgctggcgaaaatccagccgactgcagaaggcgaagagctggat
atcgaaacgctggccgcagcgctgctgaaaatggcacagggcgaacgtactctgatcgtt
ccgccagatgcgccgatgcgtccgaaacgcgaattccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgatcgtgctccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgt
cgtgatgccggtgatatggaactgtatcgcattgaagtgggccgtgatgatggcgttgaa
gttcgtcacatcgttggcgcgattgccaacgaaggcgatatcagcagccgttacatcggt
aacatcaaactgttcggtacgcactccactatcgaattgccgaaaggtatgccgggcgaa
gtactgcagcactttactcgcacccgcatcctgaacaaaccgatgaacatgcagctgctg
ggcgacgcgcaaccgcgtcctgagcgtagcggtggtcgtggtttcggcggcgagcgtcgt
gaaggcggtcgtggtgaaggtcgtggctttggcggcgaacgtcgtgaaggccgtggcttc
ggtggcgagcgtcgtgaaggtggccgtggtgatggtcgtcgtttcagcggcgaacgtcgt
gacggtggccgtgcgccgcgtcgtgatgatgctgccgctccgcgtcgtgatgactcttcc
agccgtcgccgtttcggtggcgatgcgtaa
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