Stutzerimonas stutzeri RCH2: Psest_0312
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Entry
Psest_0312 CDS
T02391
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psest_0312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psh03019
]
Psest_0312
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Psest_0312
Messenger RNA biogenesis [BR:
psh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psest_0312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGA84923
UniProt:
L0GDU8
LinkDB
All DBs
Position
complement(334149..335966)
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AA seq
605 aa
AA seq
DB search
MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN
PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEGKARGERNKPAEKGAE
QKERNRRSQSKSRKPARDSASGEAQVVARPPQLPPDRAPDEFRDDELDNFGNRVDYVSPY
QNKQNRGRRPGAPAQPGSAPRAAGAARTGAAGAGAPAAKGKRPGQAQGARSGQPRNGQPR
RKNESRRIDEPVVSRQEAAKPREKQPVIIHKESKIDRLPSLDQLEQLPTRPRGEKPALLT
RNREA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggctgccggt
tacacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagaccggaaccggtaagacaggcggtttcgccctgccggtcctc
gaactcctgtttccgggtggccacccggaccgtgaacaccgctacggcccgaaacagccg
cgcgtgctggtgctgacaccgacccgcgagctcgccgcccaggttcacgaaagcttcaag
gtctatgcccgtgacctgcccctgaagagcacctgcatctttggtggcgtcggcatgaac
ccgcagatccaggcggtagccaagggtctcgacgtgctggtcgcctgccccggccgcctg
ctcgacctggccaaccagaaagccatcgacctctcccatgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggtttcatccatgacgtcaagaaggtcctggccaag
ctgccggccaagcgccagaacttgctgttctcggcaaccttctccaaggacatcaccgat
ctcgccggcaagctgctgcacaaccccgagcgcatcgaggttacgccgccgaacaccacc
gtcgagcgtatcgagcagcgcatgttccgcgtagccgccagccacaagcgcgccctgctc
gctcacctgatcacccagggtgcctgggaacaggtactggttttcacccgtaccaagcac
ggcgccaaccgcctggccgagtatctggaaaagcacggcctgccggctgccgcgatccat
ggcaacaagagccagaatgcacggaccaaggccctggccgacttcaaggccaaccaggtg
cgcatcctggtcgccaccgatatcgccgcccgcggtctggatatcgatcagctgccgcac
gtggtcaacttcgagctgcccaacgtcgaagaagactatgtgcaccgcatcggtcgtacc
ggccgtgccgggcgcagcggtgaagccatttcgctggtcgcgccagacgaggaaaagttg
ctcaagggcatcgagcgcatgaccaagcagcgcattcccgaaggcgatctgatgggcttc
gatgccagtgccatcgaggcggaaaagccggaggtgcgcgaaccgcgccagccgcgtccg
cagcgcggcgaaggcaaggcacgcggcgagcgtaacaagcctgccgaaaaaggtgccgag
cagaaggagcgtaatcgtcgtagccagagcaagtcccgcaagcctgcgcgcgatagcgcc
agcggcgaagcgcaggtcgtcgcgcgtccgccgcagctgccgccggatcgcgctccggac
gagttccgcgatgatgagctggacaacttcggcaatcgcgtcgattacgtcagcccgtac
cagaacaagcagaaccgcggccgccgtcccggcgccccggctcagcctggtagcgcgcca
cgcgcagccggagccgcgcgtactggtgccgccggtgccggcgcgcctgctgccaagggc
aaacgcccaggccaggcccagggcgcacgcagtggtcagccacgcaacggccagccacgg
cgcaagaacgaaagccgtcgtatcgacgagcctgtcgtttcgcgacaggaggccgccaag
cctcgcgaaaagcagccggtgatcattcacaaggagtcgaagatcgatcgtctgcccagc
ctggatcagctcgagcagctaccaacgcgtccacggggcgagaagccggccctgctgacg
cgtaaccgcgaagcctga
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