Stutzerimonas stutzeri RCH2: Psest_1653
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Entry
Psest_1653 CDS
T02391
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psest_1653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psh03400
]
Psest_1653
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psest_1653
DNA repair and recombination proteins [BR:
psh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Psest_1653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGA86203
UniProt:
L0GHI8
LinkDB
All DBs
Position
complement(1759481..1762927)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN
RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPEL
AIESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLAS
DQRLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGS
PVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAG
PQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPNEQGS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcttgcgccttccccctctgcctgccgccagcggcaagcaacactggggcaat
cttccaggagccgcgctgagcctggcgattgccgaagcagccagcaacgccaaacgcttc
acgttgctcctcaccgccgacagccagagtgccgaacgcctgcaggaagagctcgccttc
ttcgcgccgggactgccggtgctgcatttccccgattgggaaacgctgccctacgacata
ttttcgccacatcaggacatcgtctcccagcgcatttccgcgctctaccaactgccggaa
ctgagccacggcgtgctggtagtgccgatcaccaccgccctacacaggctggcgccgaag
cgcttcctgctgggttcgagtctggtgctggacgtcgggcagaagctggacgtcgaacag
atgcgcctgcgcctggaagcagccggctaccgctgcgtggataccgtctatgaacatggc
gagttcgccgtgcgcggtgcgttgatcgatctgttccccatgggcagccccctgccctac
cgcatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgatccggaaaatcag
cgctcgatcgacaaggtcgaatcgatccggctgttgccggcacgcgagttccccctgaag
aaggaggcggtcaccggcttccgcgcgcgttttcgcgaacgtttcgacgtcgatttccgc
cgctgcccgatctatcaggatctctccaccggtatcaccccggcgggcatcgagtactac
ctgccgctgttctatgaagaaaccgcgacgttgttcgattacctgcccgaagacagccaa
gtgttctcgctgcccggcatcgaacaggccgccgagcagttctggagtgatgtacgcaat
cgctacgaggaacgtcgcgtcgatcccgagcgcccgctgctgccgcctgccgagctgttc
atgccggtggaggactgcttcgctcgtctgaaactctggccgcgcgtggtcgccagccag
caggacgtcgagtcaggtatcggccgtgaacgcttcaatgcccaggcgctgccagaactg
gccatcgagtcaaaggccagcgagccgttgggcaagctgcggcagttcctcgaaagctac
cccgggcgcgtgctgttcactgccgaatccgctggtcgccgcgaggtgctgctggagttg
ctggcacggctgaaactgcgtcctcaggaagtcgacggctggacagacttccttgccagc
gaccaacgtctggccatcaccatcgccccgctcgacgaaggcctgcaactggacgacgtg
gcactggtggcggaaagtccgctgttcggccagcgcgtcatgcagcgtcgccgccgcgag
aagagtcgcgacggcggcgagaacgtcatcaagaacctcaccgagctgcgcgaaggctcg
ccggtggtgcacatcgatcacggtgtcggtcgctaccagggcctgaccacgctggagatc
gaaggccaggcgcaggaattcctgctgctgcagtacgccgaggaggcgaagctctacgta
ccggtcgccagcctgcacctgatcgcccgctatacaggcagcgacgacgcgctcgcgcca
ctgcaccggctcggttcggaaacctggcagaaggccaagcgcaaggcggccgagcaggtg
cgcgacgtcgctgccgagctgctggatatatacgcccgccgcgccgcacgcgagggttat
gccttcaaagacccgcaggtcgactacgaaacgttcgccgcaggctttccgttcgaggag
acacccgatcagcaggccgccatcgacgcggtacgcgaggacctgctctcggccaagccg
atggaccgtctggtctgtggtgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtccatggcggccggcaggttggcgtactggtgccgaccaccctgctc
gcccagcagcattacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgag
gtgatgagccgcttcaaatccgccaaggaagtgcagaacgctatcgccgagcttgccgag
ggcaagatcgacattctcatcggcactcacaagctgctgcaggatgacgtcaagttcagc
aacctgggcctggtcatcatcgacgaggagcatcgcttcggcgtacgccagaaggaacag
ctcaaggcgctgcgcagcgaggtagacatcctcacgctgaccgccacgccgattccacgc
acgctgaacatgtccatcgccggcatgcgcgacttgtcgatcatcgccacgccgccggcg
cgccgcctgtcggtgcgcaccttcgtcatggaacagcagaacaccgtgatcaaggaggcg
ctgctacgcgagctgttgcgtggcggccaggtctattacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgacctgcaggcactggtgccggaggcacgcgtcgcgatcggc
cacgggcagatgcgcgagcgtgacctcgaacaggtcatgagcgacttctaccacaagcgt
ttcaacgtgctggtggcctcgaccattatcgaaaccggcatcgacgtgccgagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctagcccagctgcaccagctgcgtggt
cgggtcgggcgcagtcaccaccaggcctatgcctatctgctcacccctactcgcaaggcc
atgaccgacgacgcgcagaagcgcctggaggccatcgccaatgcccaggacctcggcgca
ggcttcgtcctggccacccacgacctggaaatccgcggcgccggcgagctgctcggcgag
ggccagagcggacagatccaggccgtcggcttcactctttatatggaaatgctcgagcgc
gcggtcaaagccatccgcaagggcgagcagccgaacctggagcagccgctggggggtggg
ccggagatcaacctgcgcctgccggcactgattccggaggactatctgccggacgtgcac
gcccgtctgatcctctacaagcgtatcgccaatgccgccgacgaggatggcttgaaggag
ctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccaaccaagaatctggtg
cgcctgacgctgctcaagctgcaggcggaaaagctcggcatcaccaagatcgacgccggc
ccgcagggtgggcgcatcgagttctcggccgatacctcggtcgatccaatggtgctgatc
aagctgatccagagtcagcccaagcgctacaagttcgaaggcgccacgctgttcaaattc
caggtgccgatggaacgcccggaggaacgcttcaatacgctggaagcgctgcttgagcgg
ctggcgcccaatgagcaaggatcctag
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