Stutzerimonas stutzeri RCH2: Psest_1679
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Entry
Psest_1679 CDS
T02391
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psest_1679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psh03019
]
Psest_1679
03009 Ribosome biogenesis [BR:
psh03009
]
Psest_1679
Enzymes [BR:
psh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Psest_1679
Messenger RNA biogenesis [BR:
psh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psest_1679
Ribosome biogenesis [BR:
psh03009
]
Prokaryotic type
rRNA processing factors
Psest_1679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AGA86229
UniProt:
L0GLM3
LinkDB
All DBs
Position
complement(1786484..1789666)
Genome browser
AA seq
1060 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDIPADMGLIVRTAGLGRSSEELQC
DLDYLLQLWTAVKDASKDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALS
FIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKM
REALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPEILAGQASYEMSQTEAEEAQPVSSTRTLVRQEAAVKTAPQRTAPAPAAAA
APAEAPAAAPAQEPSLFKGLIKSLVGLFAGEAKEPQAAAEVEKKPASPRPQRNDERRSGR
QQNRRRDSRGGRDEERKPREERQPREERQPREERQPRDDRQPREERQPRPPREERKPREQ
VEATEAQPRRERAPREERKPREERKRELRAPIDEAPVTAAEEEQVERQPRAPREERKPRA
EQQAVAAADELLQQTEDANEAEDAQDTNEASEGNDGERPRRRSRGQRRRSNRRERQRDAN
GNEIDEVDESNAPVKTEEIAVAATAAALAANTTDTEAAPQVKLADDAVIQTSTEGVATIV
EQAAVAEVTDERTAAEEPAVVEAAVEAPVQPTEVAAGEVAPSEVPAVQTDVTPQPASEPV
VEKTEAAPAAAPALTPSGRAPNDPREVRRRQREAERLAKEAAEAEAKAAAAQPLASPEIV
ASEPAEETQTEAIAQPVASDAQPEQVVESAPAAEQLASEEPSVSPTVEPTQQAQTPVTEP
VAEVVEEKPEAPVSEEAPQTAPEEKAAEGDEPDNREKPQG
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcctgaagagttgcgtgtcgcactggtcgac
ggccaacgcttgttcgatctggacatcgaatcgggcgcccgcgaacagaagaaagccaat
atctacaaaggcaagatcacccgcgtagagccaagcctcgaagccgcctttgtcgatttc
ggcgccgagcgccacggcttcctccccctcaaggaaatctcccgcgagtacttcagcaaa
tcgcctgaaggccgcgtgaacatcaaagacgtcctgcgcgaaggccaggaagtcatcgtc
caggtcgaaaaggaagagcgcggtaacaaaggcgccgcactgaccaccttcatcagcctc
gccgggcgttacctggtgctgatgccgaacaatccgcgcgccggcggcatttcgcgccgc
atcgaaggcgaagaacgcaacgaactgcgcgaagccctgaatggcctcgatatccctgcc
gacatgggcctcatcgtgcgcaccgccggcctgggccgctccagcgaagagctgcaatgc
gacctcgactatctgctgcaactttggaccgcagtcaaggatgcgtccaaggatcgcgcc
gcaccgttcctgatctaccaggaatccaacgtcatcatccgcgcaatccgcgactatctg
cgccaggacatcggtgaagtactgatcgacagcgtggaggcccaggacgaagcactgagc
ttcatccagcaggtcatgccgcagtacgccagcaagatcaagctgtatgaagactccgtt
ccgctgttcaaccgtttccagatcgaaagccagattgagacagccttccagcgtgaagtg
aagttgccctccggcggctcgatcgtcatcgatccgaccgaagctctggtgtccatcgac
atcaactctgcgcgcgccaccaagggcggcgatatcgaagaaaccgcgctgcagaccaac
ctggaagcggcggaagaaatcgcccgtcagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacgccagccaagaaccagcgcgccgttgaagaaaagatg
cgcgaagcgcttgaagccgaccgcgcacgcatccaggtcggtcgcatctcacgcttcggc
ctgctggaaatgtcccgccagcgtctgcgtccatcccttggcgagaccagcggcatcgtc
tgcccgcgctgtaatggccaaggcatcatccgcgacgtggaatcgctgtcgctggctatt
ctgcgcctgatcgaagaagaagcgctgaaagaccgtaccgccgaggttcgcgcccgcgtg
ccgttccaggtcgccgctttcctgctcaacgagaagcgcaacgcgatcaccaagatcgaa
ctgcgcactcgcgcgcgcatcttcatcctgccggatgaccatctggaaacgccgcacttc
gaagtacagcgtctgcgtgacgacagcccagagattctggccggccaggcaagctacgag
atgagccagaccgaagccgaggaagcgcagccggtcagttccactcgcacccttgttcgc
caggaagcggccgtcaagaccgcaccgcagcgcactgcaccagcaccagcagccgccgca
gctccagccgaagcacccgccgccgccccggcacaagagccaagtctgttcaaaggcctg
atcaaatccctggtcggattgttcgcaggcgaggcgaaagagccgcaagccgctgccgaa
gtggagaagaagcctgcctctccccggccgcagcgcaacgacgagcgccgcagtggacgg
cagcagaaccgccgccgtgattcacgcggtggccgtgacgaagagcgcaagccgcgtgag
gagcgtcagccgcgcgaagaacggcaaccccgcgaagagcgtcagccgcgtgatgaccgc
cagccacgggaagagcgccagccacgcccgccgcgcgaggagcgcaaaccacgcgagcaa
gttgaagccaccgaggcccaaccgcgccgcgagcgagctccgcgtgaagagcgcaagccc
cgcgaggagcgtaaacgcgaactgcgtgcgccgattgatgaagcaccggtaaccgcagca
gaagaagagcaggttgagcgccagccccgcgcgccacgtgaagagcgcaagccgcgtgcc
gaacagcaggctgtcgctgccgccgacgagctgctgcagcaaaccgaagacgccaacgaa
gccgaggacgcacaagatacaaacgaggcttccgaaggcaacgatggcgagcgtccacgc
cgccgctctcgtggccagcgtcgccgcagcaaccgtcgcgagcgccagcgcgatgccaac
ggcaacgagatcgacgaggtcgacgaaagcaacgcaccggtcaagaccgaggagatcgct
gttgcggcaaccgcagccgcgctagccgcaaacactaccgacaccgaagccgcaccgcag
gtcaagcttgccgatgacgccgtgatccagaccagcaccgaaggcgtcgcaaccatcgtc
gagcaggccgctgttgcagaggttactgacgagcgcacggctgccgaggaacctgcagta
gtcgaagctgcagtcgaggctccggtacaaccgaccgaagttgcagcaggcgaagttgca
ccaagcgaggtgcctgccgtgcagaccgacgtaactccgcaaccagcctccgagccagtt
gtcgagaaaaccgaagcagcaccggctgccgcacccgcattgacgcctagcggccgcgca
ccaaacgatccgcgcgaagtccgtcgccgtcagcgcgaagccgagcgcctggccaaggaa
gcagctgaagccgaagccaaggccgcagccgcgcagccgctggccagcccggaaatcgtt
gctagtgaaccggctgaagaaacgcagaccgaagctattgcgcagccagtagccagcgat
gcccagccggagcaggtggtagagtccgcccctgctgctgaacaacttgccagcgaagag
ccatcggtcagtccgactgtcgagcccactcagcaggcgcaaacgccagtaacggaacca
gtagcggaagtagtcgaggaaaaaccagaagcaccggtatccgaggaggcacctcaaact
gcccctgaggaaaaagctgctgaaggcgacgagccagataatcgtgagaagccacaaggc
taa
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