Stutzerimonas stutzeri RCH2: Psest_1869
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Entry
Psest_1869 CDS
T02391
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psest_1869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psh03019
]
Psest_1869
03400 DNA repair and recombination proteins [BR:
psh03400
]
Psest_1869
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psest_1869
Messenger RNA biogenesis [BR:
psh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psest_1869
DNA repair and recombination proteins [BR:
psh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psest_1869
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
HTH_23
Sigma70_r4_2
HTH_20
HTH_7
GerE
ResIII
PF0610-like_N
HTH_29
PAX
Motif
Other DBs
NCBI-ProteinID:
AGA86415
LinkDB
All DBs
Position
1978282..1980405
Genome browser
AA seq
707 aa
AA seq
DB search
MLDQAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLRDGLA
VVVSPLIALMDDQVATLDELGVSAVALNSTLSPDEQRDIAERIRRNEIKMLYLAPERLVQ
PRMLAFLQRLEIALFAIDEAHCVSQWGHDFRPEYMQLGQLSELFPGVPRIALTATADMRT
REEIVQRLHLENAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAERRGDAGIVYCMSRKK
VDDFAAFLTEQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRVEQHK
LDAMLALCEETRCRRQALLAYFDEELPSPCGHCDNCVDGVQTWDATEPARQALSAIYRSG
QRYGVGHLVDVLLGRDNDKVRGLGHQHLSVFGVGKALAETEWRSLFRQLVARGLADVDLD
GFGGLRLSDSCRPLLRGEVSLELRRDLSSKAPKPAASAASQLVRSEERETWEALRTLRRK
LAEEHSVPPYVIFPDATLLEMLRSQPASLSDMAMISGVGARKLERYGQAFLEVLQGNSDV
AKPPADLRHELITLARAGMTPAQIARQLDCSEKNVYAMLAEAIGLQQLSLEQALDLPEDL
LGEIQEAFLDGEGELPPVSAVAEQFAGRVPEQVLYCVRAALQVEFEL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccaggcacagcgcatcctcaaagacgttttcggctacgacgcgtttcgtggc
aaccagggcgcgatcatcgagcgggtcggcagcggcggcgacgctttggtgctgatgccg
accggcggcggcaagtcgctgtgctatcaggttccagcgctgttgcgcgacgggctggcg
gtagtggtgtcgccgctgatcgcgctgatggacgatcaggtggcaaccctcgacgagctc
ggggtttccgcggtggcgctcaactccacgctcagccccgacgagcagcgcgacattgcc
gaacgcatccggcgcaacgagatcaagatgctctacctcgcgccggagcggctggtccag
ccacgcatgctggcgtttctacagcgtctggaaattgccctgttcgccatcgacgaggcg
cattgtgtttcccagtggggccacgatttccgtcccgagtacatgcagttgggacagctt
tccgaactgtttcccggcgtaccgcgcatcgcgctgaccgccacggcggacatgcgaacc
agggaggagatcgtccagcgattgcatctggaaaatgccgaacgctttctctccagtttc
gatcggccgaacatcttctatcgcatcgtgcccaaggagcagccacgcaagcagttgctg
ggctttctcgccgaacgccgtggcgatgccggcatcgtctactgcatgtcgcgcaagaag
gtcgatgactttgccgccttcctcaccgagcagggctttccggcactgccgtatcacgct
ggcttgcccaatgagctgcgcgcctatcatcagaagcgcttccttaacgaggaaggtctg
atcatggtcgcgaccatcgcgttcggtatgggtatcgacaaacccaacgtgcgcttcgtt
gcccacctcgatctgcccaagtccctggaagcctattaccaggaaaccgggcgggcaggg
cgcgacggcctgcctgcggatgcctggatggcctacggcctgcaggacgtcatctttctc
aagcagatgctcaacaattccgagggcgatgagcggcacaagcgggtcgagcaacacaag
ctcgacgccatgctggccctgtgtgaggaaacccgctgtcggcgccaggcactgttggcg
tatttcgacgaggaattacccagcccatgcggtcattgcgataactgcgtcgatggtgtg
cagacgtgggacgcaaccgaacctgcgcgccaggcgctatcggccatctatcgcagcggt
caacgttacggcgtcggccatttggtagatgtcttgctggggcgcgataacgataaggta
cgtgggctcggccatcagcacctgtccgtgttcggcgtaggcaaggcgctggcggaaact
gaatggcggtcactgtttcgtcagctggtggcgcgaggcctggcggacgtcgatctcgac
ggtttcggcgggttgcgcctgagcgacagctgtcgcccgctcctgcgtggggaagtcagc
ctcgagctgcgccgtgatttgtccagcaaggctccaaagcctgcagccagcgcggcgagc
caactggtacgcagcgaggagcgcgaaacctgggaggcgctgcgcacactacggcgcaag
ctggccgaagagcacagcgtgccgccatacgtgatcttccccgacgccaccctgctggaa
atgttgcgtagccagcccgcatcgctttccgacatggcgatgatcagcggcgtcggcgcg
cgcaaactggagcgttacggacaggcgttcctcgaggtgctgcagggtaatagcgatgtt
gccaagccgcctgccgatcttcgtcacgagttgatcacgctggcccgtgcaggcatgact
ccggcgcagatcgctcgccagctcgactgcagcgagaagaatgtctacgcgatgctcgcc
gaggccatcggcctgcagcagttgagtctggagcaggcgctcgacttgccggaggattta
ctgggcgagattcaggaagccttccttgacggcgaaggcgagctgccgcccgtcagcgct
gtagccgaacagttcgccggacgcgtgccggagcaagtgctttattgcgtgcgagctgcg
ctgcaggtcgagttcgaattgtaa
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